SCOPe 2.02: Domain d2zjpd1: 2zjp D:3-179

Lineage for d2zjpd1 (2zjp D:3-179)

1. Root: SCOPe 2.02

2. Class d: Alpha and beta proteins (a+b) [53931] (376 folds)

3. Fold d.77: RL5-like [55281] (1 superfamily)
   beta-alpha-beta(2)-alpha-beta(3)-alpha; 2 layers, alpha/beta; antiparallel beta-sheet: order 231654

4. Superfamily d.77.1: RL5-like [55282] (3 families)

5. Family d.77.1.1: Ribosomal protein L5 [55283] (1 protein)

6. Protein Ribosomal protein L5 [55284] (5 species)
   synonym: 50S ribosomal protein L5p, HMAL5, HL13

7. Species Deinococcus radiodurans [TaxId:1299] [160487] (6 PDB entries)
   Uniprot Q9RXJ0 3-179

8. Domain d2zjpd1: 2zjp D:3-179 [154494]
   Other proteins in same PDB: d2zjp11, d2zjp21, d2zjp31, d2zjp41, d2zjpa1, d2zjpa2, d2zjpb1, d2zjpc1, d2zjpe1, d2zjpe2, d2zjpf1, d2zjpf2, d2zjpg1, d2zjph1, d2zjpi1, d2zjpj1, d2zjpk1, d2zjpl1, d2zjpm1, d2zjpn1, d2zjpo1, d2zjpp1, d2zjpq1, d2zjpr1, d2zjps1, d2zjpt1, d2zjpu1, d2zjpv1, d2zjpw1, d2zjpy1
   automatically matched to 2ZJR D:3-179
   protein/RNA complex; complexed with mg, no1, zn

Details for d2zjpd1

PDB Entry: 2zjp, 3.7 Å

PDB Description: thiopeptide antibiotic nosiheptide bound to the large ribosomal subunit of deinococcus radiodurans

PDB Compounds: (D:) 50S ribosomal protein L5

SCOPe Domain Sequences for d2zjpd1:

Sequence; same for both SEQRES and ATOM records:

>d2zjpd1 d.77.1.1 (D:3-179) Ribosomal protein L5 {Deinococcus radiodurans [TaxId: 1299]}
qlktkyndqvrpalmqqfgyssvmavpriekivvneglgsskedskaidkaakelalitl
qkpiitkakksisnfklrqgmpvgikvtlrgermyvflekliniglprirdfrginpnaf
dgrgnynlgikeqlifpeitydmvdktrgmditivttaktdeearallqsmglpfrk

Timeline for d2zjpd1:

• d2zjpd1 first appeared in SCOP 1.75
  
• d2zjpd1 appears in SCOPe 2.01
  
• d2zjpd1 appears in SCOPe 2.03
  
• d2zjpd1 appears in the current release, SCOPe 2.08