SCOPe 2.08: Domain d2z67d_: 2z67 D:

Lineage for d2z67d_ (2z67 D:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
   main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest

4. Superfamily c.67.1: PLP-dependent transferases [53383] (10 families)

5. Family c.67.1.9: SepSecS-like [159704] (2 proteins)
   Pfam PF05889

6. Protein Selenocysteinyl-tRNA synthase (SepSecS) [159705] (3 species)

7. Species Methanococcus maripaludis [TaxId:39152] [159708] (1 PDB entry)
   Uniprot Q6LZM9 1-434

8. Domain d2z67d_: 2z67 D: [154173]
   automated match to d2z67a1
   complexed with plp, so4

Details for d2z67d_

PDB Entry: 2z67, 2.5 Å

PDB Description: Crystal structure of archaeal O-phosphoseryl-tRNA(Sec) selenium transferase (SepSecS)

PDB Compounds: (D:) O-phosphoseryl-tRNA(Sec) selenium transferase

SCOPe Domain Sequences for d2z67d_:

Sequence; same for both SEQRES and ATOM records:

>d2z67d_ c.67.1.9 (D:) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}
mldfnieglipknmekrgelvlneylkeiedvfnhrkipengiddekiklflkflsmmdt
dkdpksvrigereartyskiheelssgfchgigrsgnlvdpqpkasgasimyaltnkile
sffkqlglnvhaiatpistgmsislclsaarkkygsnvviypyashkspikavsfvgmnm
rlvetvldgdrvyvpvedienaikkeielgnrpcvlstltffpprnsddiveiakiceny
diphiingayaiqnnyyleklkkafkyrvdavvsssdknlltpiggglvystdaefikei
slsypgrasatpvvntlvsllsmgsknylelvknqknskklldellndlskktggkfldv
espiascisvnsdpveiaaklynlrvtgprgikktdhfgncylgtythdyivmnaaigvr
tedivnsvskleki

Timeline for d2z67d_:

• d2z67d_ first appeared in SCOP 1.75, called d2z67d1
  
• d2z67d_ appears in SCOPe 2.07