SCOPe 2.08: Domain d2z3ya2: 2z3y A:274-654,A:764-831

Lineage for d2z3ya2 (2z3y A:274-654,A:764-831)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.3: FAD/NAD(P)-binding domain [51904] (1 superfamily)
   core: 3 layers, b/b/a; central parallel beta-sheet of 5 strands, order 32145; top antiparallel beta-sheet of 3 strands, meander

4. Superfamily c.3.1: FAD/NAD(P)-binding domain [51905] (9 families)

5. Family c.3.1.2: FAD-linked reductases, N-terminal domain [51913] (18 proteins)
   C-terminal domain is alpha+beta is common for the family

6. Protein Lysine-specific histone demethylase 1, LSD1 [159432] (1 species)

7. Species Human (Homo sapiens) [TaxId:9606] [159433] (27 PDB entries)
   Uniprot O60341 274-654,764-836

8. Domain d2z3ya2: 2z3y A:274-654,A:764-831 [154025]
   Other proteins in same PDB: d2z3ya1, d2z3ya3
   automatically matched to 2IW5 A:274-654,A:764-836
   complexed with f2n

Details for d2z3ya2

PDB Entry: 2z3y, 2.25 Å

PDB Description: Crystal structure of Lysine-specific demethylase1

PDB Compounds: (A:) Lysine-specific histone demethylase 1

SCOPe Domain Sequences for d2z3ya2:

Sequence, based on SEQRES records:

>d2z3ya2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
ptkktgkviiigsgvsglaaarqlqsfgmdvtlleardrvggrvatfrkgnyvadlgamv
vtglggnpmavvskqvnmelakikqkcplyeangqavpkekdemveqefnrlleatsyls
hqldfnvlnnkpvslgqalevviqlqekhvkdeqiehwkkivktqeelkellnkmvnlke
kikelhqqykeasevkpprditaeflvkskhrdltalckeydelaetqgkleeklqelea
nppsdvylssrdrqildwhfanlefanatplstlslkhwdqdddfeftgshltvrngysc
vpvalaegldiklntavrqvrytasgceviavntrstsqtfiykcdavlctlplgvlkqq
ppavqfvpplpewktsavqrmXvaagssgndydlmaqpitpgpsipgapqpiprlffage
htirnypatvhgallsglreagriadqflg

Sequence, based on observed residues (ATOM records):

>d2z3ya2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
ptkktgkviiigsgvsglaaarqlqsfgmdvtlleardrvggrvatfrkgnyvadlgamv
vtglggnpmavvskqvnmelakikqkcplyeangqavpkekdemveqefnrlleatsyls
hqldfnvlnnkpvslgqalevviqlqekhvkdeqiehwkkivktqeelkellnkmvnlke
kikelhqqykeditaeflvkskhrdltalckeydelaetqgkleeklqeleanppsdvyl
ssrdrqildwhfanlefanatplstlslkhwdqdddfeftgshltvrngyscvpvalaeg
ldiklntavrqvrytasgceviavntrstsqtfiykcdavlctlplgvlkqqppavqfvp
plpewktsavqrmXvaagssgndydlmaqpitppiprlffagehtirnypatvhgallsg
lreagriadqflg

Timeline for d2z3ya2:

• d2z3ya2 first appeared in SCOP 1.75
  
• d2z3ya2 appears in SCOPe 2.07