SCOPe 2.06: Domain d2vynb2: 2vyn B:147-310

Lineage for d2vynb2 (2vyn B:147-310)

1. Root: SCOPe 2.06

2. Class d: Alpha and beta proteins (a+b) [53931] (385 folds)

3. Fold d.81: FwdE/GAPDH domain-like [55346] (4 superfamilies)
   core: alpha-beta-alpha-beta(3); mixed sheet: 2134, strand 2 is parallel to strand 1

4. Superfamily d.81.1: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain [55347] (5 families)
   N-terminal domain is the classic Rossmann-fold

5. Family d.81.1.1: GAPDH-like [55348] (6 proteins)
   has many additional secondary structures

6. Protein Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) [55349] (20 species)

7. Species Escherichia coli [TaxId:562] [55350] (9 PDB entries)
   Uniprot P06977

8. Domain d2vynb2: 2vyn B:147-310 [153710]
   Other proteins in same PDB: d2vyna1, d2vynb1, d2vync1
   automated match to d1s7ca2
   complexed with fmt, nad

Details for d2vynb2

PDB Entry: 2vyn, 2.2 Å

PDB Description: structure of e.coli gapdh rat sperm gapdh heterotetramer

PDB Compounds: (B:) glyceraldehyde-3-phosphate dehydrogenase

SCOPe Domain Sequences for d2vynb2:

Sequence; same for both SEQRES and ATOM records:

>d2vynb2 d.81.1.1 (B:147-310) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}
scttnclaplakvindnfgiieglmttvhattatqktvdgpshkdwrggrgasqniipss
tgaakavgkvlpelngkltgmafrvptpnvsvvdltvrlekaatyeqikaavkaaaegem
kgvlgyteddvvstdfngevctsvfdakagialndnfvklvswy

Timeline for d2vynb2:

• d2vynb2 first appeared in SCOP 1.75
  
• d2vynb2 appears in SCOPe 2.05
  
• d2vynb2 appears in SCOPe 2.07
  
• d2vynb2 appears in the current release, SCOPe 2.08