Lineage for d2vrja1 (2vrj A:3-445)

  1. Root: SCOP 1.75
  2. 814173Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 814174Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 815285Superfamily c.1.8: (Trans)glycosidases [51445] (14 families) (S)
  5. 816262Family c.1.8.4: Family 1 of glycosyl hydrolase [51521] (5 proteins)
  6. 816272Protein Beta-glucosidase A [51528] (7 species)
  7. 816312Species Thermotoga maritima [TaxId:2336] [89475] (23 PDB entries)
    Uniprot Q08638
  8. 816329Domain d2vrja1: 2vrj A:3-445 [153512]
    automatically matched to d1od0b_
    complexed with act, ca, ncw

Details for d2vrja1

PDB Entry: 2vrj (more details), 1.9 Å

PDB Description: beta-glucosidase from thermotoga maritima in complex with n-octyl-5-deoxy-6-oxa-n-(thio)carbamoylcalystegine
PDB Compounds: (A:) beta-glucosidase a

SCOP Domain Sequences for d2vrja1:

Sequence, based on SEQRES records: (download)

>d2vrja1 c.1.8.4 (A:3-445) Beta-glucosidase A {Thermotoga maritima [TaxId: 2336]}
vkkfpegflwgvatasyqiegspladgagmsiwhtfshtpgnvkngdtgdvacdhynrwk
edieiieklgvkayrfsiswprilpegtgrvnqkgldfynriidtllekgitpfvtiyhw
dlpfalqlkggwanreiadwfaeysrvlfenfgdrvknwitlnepwvvaivghlygvhap
gmrdiyvafravhnllraharavkvfretvkdgkigivfnngyfepasekeediravrfm
hqfnnyplflnpiyrgdypelvlefareylpenykddmseiqekidfvglnyysghlvkf
dpdapakvsfverdlpktamgweivpegiywilkkvkeeynppevyitengaafddvvse
dgrvhdqnridylkahigqawkaiqegvplkgyfvwslldnfewaegyskrfgivyvdys
tqkrivkdsgywysnvvknngle

Sequence, based on observed residues (ATOM records): (download)

>d2vrja1 c.1.8.4 (A:3-445) Beta-glucosidase A {Thermotoga maritima [TaxId: 2336]}
vkkfpegflwgvatasyqiegspladgagmsiwhtfshtpgnvkngdtgdvacdhynrwk
edieiieklgvkayrfsiswprilpegtgrvnqkgldfynriidtllekgitpfvtiyhw
dlpfalqlkggwanreiadwfaeysrvlfenfgdrvknwitlnepwvvaivghlygvhap
gmrdiyvafravhnllraharavkvfretvkdgkigivfnngyfepasekiravrfmhqf
nnyplflnpiyrgdypelvlefareylpenykddmseiqekidfvglnyysghlvkfdpp
akvsfverdlpktamgweivpegiywilkkvkeeynppevyitengaafddvvsedgrvh
dqnridylkahigqawkaiqegvplkgyfvwslldnfewaegyskrfgivyvdystqkri
vkdsgywysnvvknngle

SCOP Domain Coordinates for d2vrja1:

Click to download the PDB-style file with coordinates for d2vrja1.
(The format of our PDB-style files is described here.)

Timeline for d2vrja1: