Lineage for d2vqfm1 (2vqf M:2-126)

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2013619Fold a.156: S13-like H2TH domain [81297] (1 superfamily)
    core: 3-4 helices
  4. 2013620Superfamily a.156.1: S13-like H2TH domain [46946] (4 families) (S)
    contains a helix-two turns-helix (H2TH) motif
  5. 2013621Family a.156.1.1: Ribosomal protein S13 [46947] (1 protein)
    contains 3 helices and a beta-hairpin in the core and a non-globular C-terminal extension
    automatically mapped to Pfam PF00416
  6. 2013622Protein Ribosomal protein S13 [46948] (2 species)
  7. 2013650Species Thermus thermophilus [TaxId:274] [46949] (44 PDB entries)
    Uniprot P80377
  8. 2013653Domain d2vqfm1: 2vqf M:2-126 [153456]
    Other proteins in same PDB: d2vqfb1, d2vqfd1, d2vqfe1, d2vqff1, d2vqfg1, d2vqfh1, d2vqfi1, d2vqfj1, d2vqfk1, d2vqfl1, d2vqfn1, d2vqfo1, d2vqfp1, d2vqfq1, d2vqfr1, d2vqfs1, d2vqft1, d2vqfu1
    automatically matched to d1fjgm_
    complexed with k, mg, par, zn

Details for d2vqfm1

PDB Entry: 2vqf (more details), 2.9 Å

PDB Description: modified uridines with c5-methylene substituents at the first position of the trna anticodon stabilize u-g wobble pairing during decoding
PDB Compounds: (M:) 30S ribosomal protein S13

SCOPe Domain Sequences for d2vqfm1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2vqfm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus thermophilus [TaxId: 274]}

SCOPe Domain Coordinates for d2vqfm1:

Click to download the PDB-style file with coordinates for d2vqfm1.
(The format of our PDB-style files is described here.)

Timeline for d2vqfm1: