Lineage for d2vmfb5 (2vmf B:331-678)

  1. Root: SCOPe 2.05
  2. 1815291Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1815292Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 1818156Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 1818795Family c.1.8.3: beta-glycanases [51487] (27 proteins)
    consist of a number of sequence families
  6. 1819412Protein automated matches [190057] (21 species)
    not a true protein
  7. 1819440Species Bacteroides thetaiotaomicron [TaxId:226186] [255614] (7 PDB entries)
  8. 1819450Domain d2vmfb5: 2vmf B:331-678 [153325]
    Other proteins in same PDB: d2vmfa1, d2vmfa2, d2vmfa3, d2vmfa4, d2vmfb1, d2vmfb2, d2vmfb3, d2vmfb4
    automated match to d2je8a5
    complexed with br, cl, edo, mvl

Details for d2vmfb5

PDB Entry: 2vmf (more details), 2.1 Å

PDB Description: structural and biochemical evidence for a boat-like transition state in beta-mannosidases
PDB Compounds: (B:) beta-mannosidase

SCOPe Domain Sequences for d2vmfb5:

Sequence; same for both SEQRES and ATOM records: (download)

>d2vmfb5 c.1.8.3 (B:331-678) automated matches {Bacteroides thetaiotaomicron [TaxId: 226186]}

SCOPe Domain Coordinates for d2vmfb5:

Click to download the PDB-style file with coordinates for d2vmfb5.
(The format of our PDB-style files is described here.)

Timeline for d2vmfb5: