SCOPe 2.08: Domain d2vl8c_: 2vl8 C:

Lineage for d2vl8c_ (2vl8 C:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.68: Nucleotide-diphospho-sugar transferases [53447] (1 superfamily)
   3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest

4. Superfamily c.68.1: Nucleotide-diphospho-sugar transferases [53448] (20 families)

5. Family c.68.1.22: Glycosylating toxin catalytic domain-like [159726] (4 proteins)
   contains Glycosyltransferase sugar-binding region containing DXD motif, Pfam PF04488

6. Protein automated matches [190532] (4 species)
   not a true protein

7. Species Clostridium sordellii [TaxId:1505] [188384] (3 PDB entries)

8. Domain d2vl8c_: 2vl8 C: [153268]
   automated match to d2bvla1
   complexed with ca, cts, udp

Details for d2vl8c_

PDB Entry: 2vl8, 2.31 Å

PDB Description: crystal structure of the catalytic domain of lethal toxin from clostridium sordellii in complex with udp, castanospermine and calcium ion

PDB Compounds: (C:) cytotoxin l

SCOPe Domain Sequences for d2vl8c_:

Sequence, based on SEQRES records:

>d2vl8c_ c.68.1.22 (C:) automated matches {Clostridium sordellii [TaxId: 1505]}
mnlvnkaqlqkmayvkfriqedeyvailnaleeyhnmsessvvekylklkdinnltdnyl
ntykksgrnkalkkfkeyltmevlelknnsltpveknlhfiwiggqindtainyinqwkd
vnsdytvkvfydsnaflintlkktivesatnntlesfrenlndpefdynkfyrkrmeiiy
dkqkhfidyyksqieenpefiidniiktylsneyskdlealnkyieeslnkitanngndi
rnlekfadedlvrlynqelverwnlaaasdilrismlkedggvyldvdmlpgiqpdlfks
inkpdsitntswemikleaimkykeyipgytsknfdmldeevqrsfesalssksdkseif
lplddikvsplevkiafannsvinqalislkdsycsdlvinqiknrykilndnlnpsine
gtdfnttmkifsdklasisnednmmfmikitnylkvgfapdvrstinlsgpgvytgayqd
llmfkdnstnihllepelrnfefpktkisqlteqeitslwsfnqaraksqfeeykkgyfe
g

Sequence, based on observed residues (ATOM records):

>d2vl8c_ c.68.1.22 (C:) automated matches {Clostridium sordellii [TaxId: 1505]}
mnlvnkaqlqkmayvkfriqedeyvailnaleeyhnmsessvvekylklkdinnltdnyl
ntykksgrnkalkkfkeyltmevlelknnsltpveknlhfiwiggqindtainyinqwkd
vnsdytvkvfydsnaflintlkktivesatnntlesfrenlndpefdynkfyrkrmeiiy
dkqkhfidyyksqieenpefiidniiktylsneyskdlealnkyieeslnkitanngndi
rnlekfadedlvrlynqelverwnlaaasdilrismlkedggvyldvdmlpgiqpdlfks
inkpdsitntswemikleaimkykeyipgytsknfdmldeevqrsfesalssksdkseif
lplddikvsplevkiafannsvinqalislkdsycsdlvinqiknrykilndnlnpsine
gtdfnttmkifsdklasisnednmmfmikitnylkvgfapdvrstinlsgpgvytgayqd
llmfkdnstnihllepelrnfefpktkisqlteqeitslwaraksqfeeykkgyfeg

Timeline for d2vl8c_:

• d2vl8c_ first appeared in SCOP 1.75, called d2vl8c1
  
• d2vl8c_ appears in SCOPe 2.07