SCOP 1.75: Domain d2vl8a1: 2vl8 A:1-542

Lineage for d2vl8a1 (2vl8 A:1-542)

1. Root: SCOP 1.75

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.68: Nucleotide-diphospho-sugar transferases [53447] (1 superfamily)
   3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest

4. Superfamily c.68.1: Nucleotide-diphospho-sugar transferases [53448] (19 families)

5. Family c.68.1.22: Glycosylating toxin catalytic domain-like [159726] (3 proteins)
   contains Glycosyltransferase sugar-binding region containing DXD motif, Pfam PF04488

6. Protein Cytotoxin L [159727] (1 species)

7. Species Clostridium sordellii [TaxId:1505] [159728] (3 PDB entries)
   Uniprot Q46342 1-542

8. Domain d2vl8a1: 2vl8 A:1-542 [153266]
   automatically matched to 2VKD A:1-542
   complexed with ca, cts, udp; mutant

Details for d2vl8a1

PDB Entry: 2vl8, 2.31 Å

PDB Description: crystal structure of the catalytic domain of lethal toxin from clostridium sordellii in complex with udp, castanospermine and calcium ion

PDB Compounds: (A:) cytotoxin l

SCOP Domain Sequences for d2vl8a1:

Sequence, based on SEQRES records:

>d2vl8a1 c.68.1.22 (A:1-542) Cytotoxin L {Clostridium sordellii [TaxId: 1505]}
mnlvnkaqlqkmayvkfriqedeyvailnaleeyhnmsessvvekylklkdinnltdnyl
ntykksgrnkalkkfkeyltmevlelknnsltpveknlhfiwiggqindtainyinqwkd
vnsdytvkvfydsnaflintlkktivesatnntlesfrenlndpefdynkfyrkrmeiiy
dkqkhfidyyksqieenpefiidniiktylsneyskdlealnkyieeslnkitanngndi
rnlekfadedlvrlynqelverwnlaaasdilrismlkedggvyldvdmlpgiqpdlfks
inkpdsitntswemikleaimkykeyipgytsknfdmldeevqrsfesalssksdkseif
lplddikvsplevkiafannsvinqalislkdsycsdlvinqiknrykilndnlnpsine
gtdfnttmkifsdklasisnednmmfmikitnylkvgfapdvrstinlsgpgvytgayqd
llmfkdnstnihllepelrnfefpktkisqlteqeitslwsfnqaraksqfeeykkgyfe
ga

Sequence, based on observed residues (ATOM records):

>d2vl8a1 c.68.1.22 (A:1-542) Cytotoxin L {Clostridium sordellii [TaxId: 1505]}
mnlvnkaqlqkmayvkfriqedeyvailnaleeyhnmsessvvekylklkdinnltdnyl
ntykksgrnkalkkfkeyltmevlelknnsltpveknlhfiwiggqindtainyinqwkd
vnsdytvkvfydsnaflintlkktivesatnntlesfrenlndpefdynkfyrkrmeiiy
dkqkhfidyyksqieenpefiidniiktylsneyskdlealnkyieeslnkitanngndi
rnlekfadedlvrlynqelverwnlaaasdilrismlkedggvyldvdmlpgiqpdlfks
inkpdsitntswemikleaimkykeyipgytsknfdmldeevqrsfesalssksdkseif
lplddikvsplevkiafannsvinqalislkdsycsdlvinqiknrykilndnlnpsine
gtdfnttmkifsdklasisnednmmfmikitnylkvgfapdvrstinlsgpgvytgayqd
llmfkdnstnihllepelrnfefpktkisqlteqeitslwsaraksqfeeykkgyfega

Timeline for d2vl8a1:

• d2vl8a1 is new in SCOP 1.75
  
• d2vl8a1 is called d2vl8a_ in SCOPe 2.01
  
• d2vl8a1 appears in the current release, SCOPe 2.08, called d2vl8a_