Lineage for d2vkda1 (2vkd A:1-542)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2133075Fold c.68: Nucleotide-diphospho-sugar transferases [53447] (1 superfamily)
    3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest
  4. 2133076Superfamily c.68.1: Nucleotide-diphospho-sugar transferases [53448] (20 families) (S)
  5. 2133931Family c.68.1.22: Glycosylating toxin catalytic domain-like [159726] (4 protein domains)
    contains Glycosyltransferase sugar-binding region containing DXD motif, Pfam PF04488
  6. 2133935Protein Cytotoxin L [159727] (1 species)
  7. 2133936Species Clostridium sordellii [TaxId:1505] [159728] (1 PDB entry)
    Uniprot Q46342 1-542
  8. 2133937Domain d2vkda1: 2vkd A:1-542 [153218]
    Other proteins in same PDB: d2vkdb_
    complexed with mn, upg

Details for d2vkda1

PDB Entry: 2vkd (more details), 2.53 Å

PDB Description: crystal structure of the catalytic domain of lethal toxin from clostridium sordellii in complex with udp-glc and manganese ion
PDB Compounds: (A:) cytotoxin l

SCOPe Domain Sequences for d2vkda1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2vkda1 c.68.1.22 (A:1-542) Cytotoxin L {Clostridium sordellii [TaxId: 1505]}
mnlvnkaqlqkmayvkfriqedeyvailnaleeyhnmsessvvekylklkdinnltdnyl
ntykksgrnkalkkfkeyltmevlelknnsltpveknlhfiwiggqindtainyinqwkd
vnsdytvkvfydsnaflintlkktivesatnntlesfrenlndpefdynkfyrkrmeiiy
dkqkhfidyyksqieenpefiidniiktylsneyskdlealnkyieeslnkitanngndi
rnlekfadedlvrlynqelverwnlaaasdilrismlkedggvyldvdmlpgiqpdlfks
inkpdsitntswemikleaimkykeyipgytsknfdmldeevqrsfesalssksdkseif
lplddikvsplevkiafannsvinqalislkdsycsdlvinqiknrykilndnlnpsine
gtdfnttmkifsdklasisnednmmfmikitnylkvgfapdvrstinlsgpgvytgayqd
llmfkdnstnihllepelrnfefpktkisqlteqeitslwsfnqaraksqfeeykkgyfe
ga

SCOPe Domain Coordinates for d2vkda1:

Click to download the PDB-style file with coordinates for d2vkda1.
(The format of our PDB-style files is described here.)

Timeline for d2vkda1: