Lineage for d2vgnb1 (2vgn B:1-135)

  1. Root: SCOPe 2.01
  2. 929298Class b: All beta proteins [48724] (174 folds)
  3. 948630Fold b.38: Sm-like fold [50181] (5 superfamilies)
    core: barrel, open; n*=4, S*=8; meander; SH3-like topology
  4. 949097Superfamily b.38.4: Dom34/Pelota N-terminal domain-like [159065] (1 family) (S)
  5. 949098Family b.38.4.1: Dom34/Pelota N-terminal domain-like [159066] (2 proteins)
    Warning: Pfam incorrectly assigns this domain to the same family as the structurally unrelated N-terminal domain of eRF1 (Pfam PF03463)
  6. 949102Protein Dom34 [159069] (1 species)
  7. 949103Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [159070] (2 PDB entries)
    Uniprot P33309 1-135
  8. 949105Domain d2vgnb1: 2vgn B:1-135 [153043]
    Other proteins in same PDB: d2vgna2, d2vgna3, d2vgnb2, d2vgnb3
    automatically matched to 2VGM A:1-135
    complexed with gol, po4

Details for d2vgnb1

PDB Entry: 2vgn (more details), 2.5 Å

PDB Description: structure of yeast dom34 : a protein related to translation termination factor erf1 and involved in no-go decay.
PDB Compounds: (B:) dom34

SCOPe Domain Sequences for d2vgnb1:

Sequence, based on SEQRES records: (download)

>d2vgnb1 b.38.4.1 (B:1-135) Dom34 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

Sequence, based on observed residues (ATOM records): (download)

>d2vgnb1 b.38.4.1 (B:1-135) Dom34 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

SCOPe Domain Coordinates for d2vgnb1:

Click to download the PDB-style file with coordinates for d2vgnb1.
(The format of our PDB-style files is described here.)

Timeline for d2vgnb1: