SCOP 1.75: Domain d2vgma2: 2vgm A:136-277

Lineage for d2vgma2 (2vgm A:136-277)

1. Root: SCOP 1.75

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.4: Translational machinery components [53137] (2 families)

5. Family c.55.4.2: ERF1/Dom34 middle domain-like [53143] (3 proteins)

6. Protein Dom34 [159645] (1 species)

7. Species Saccharomyces cerevisiae [TaxId:4932] [159646] (2 PDB entries)
   Uniprot P33309 136-277

8. Domain d2vgma2: 2vgm A:136-277 [153038]
   Other proteins in same PDB: d2vgma1, d2vgma3

Details for d2vgma2

PDB Entry: 2vgm, 2.6 Å

PDB Description: structure of s. cerevisiae dom34, a translation termination-like factor involved in rna quality control pathways and interacting with hbs1 (unlabeled protein)

PDB Compounds: (A:) dom34

SCOP Domain Sequences for d2vgma2:

Sequence, based on SEQRES records:

>d2vgma2 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]}
ieyksdtaavvlqegiahvclvtssstilkqkieysmpkkkrttdvlkfdektekfykai
ysamkkdlnfdklktiilcspgfyakilmdkifqyaeeehnkkildnkgmffiahcstgy
lqginevlknplyasklqdtky

Sequence, based on observed residues (ATOM records):

>d2vgma2 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]}
ieyksdtaavvlqegiahvclvtssstilkqkietdvlkfdektekfykaiysamkkdln
fdklktiilcspgfyakilmdkifqyaeeehnkkildnkgmffiahcstgylqginevlk
nplyasklqdtky

Timeline for d2vgma2:

• d2vgma2 is new in SCOP 1.75
  
• d2vgma2 appears in SCOPe 2.01
  
• d2vgma2 appears in the current release, SCOPe 2.08