SCOPe 2.08: Domain d2vdmh_: 2vdm H:

Lineage for d2vdmh_ (2vdm H:)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
   sandwich; 7 strands in 2 sheets; greek-key
   some members of the fold have additional strands

4. Superfamily b.1.1: Immunoglobulin [48726] (5 families)

5. Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)

6. Protein automated matches [190119] (24 species)
   not a true protein

7. Species Mouse (Mus musculus) [TaxId:10090] [186842] (622 PDB entries)

8. Domain d2vdmh_: 2vdm H: [152994]
   Other proteins in same PDB: d2vdma_, d2vdml1, d2vdml2
   automated match to d6shgh_
   complexed with agg, ca, gol, mg, nag

Details for d2vdmh_

PDB Entry: 2vdm, 2.9 Å

PDB Description: re-refinement of integrin alphaiibbeta3 headpiece bound to antagonist tirofiban

PDB Compounds: (H:) monoclonal antibody 10e5 heavy chain

SCOPe Domain Sequences for d2vdmh_:

Sequence, based on SEQRES records:

>d2vdmh_ b.1.1.1 (H:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}
evqlqqsgaelvkpgasvklsctasgfnikdtyvhwvkqrpeqglewigridpangytky
dpkfqgkatitadtssntaylqlssltsedtavyycvrplydyyamdywgqgtsvtvssa
kttapsvyplapvcgdttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdl
ytlsssvtvtsstwpsqsitcnvahpasstkvdkkieprgp

Sequence, based on observed residues (ATOM records):

>d2vdmh_ b.1.1.1 (H:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}
evqlqqsgaelvkpgasvklsctasgfnikdtyvhwvkqrpeqglewigridpangytky
dpkfqgkatitadtssntaylqlssltsedtavyycvrplydyyamdywgqgtsvtvssa
kttapsvyplapvcttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdlyt
lsssvtvtsstwpsqsitcnvahpasstkvdkkieprgp

Timeline for d2vdmh_:

• d2vdmh_ first appeared in SCOP 1.75, called d2vdmh1
  
• d2vdmh_ was called d2vdmh1 in SCOPe 2.07