SCOPe 2.08: Domain d2vana2: 2van A:149-335

Lineage for d2vana2 (2van A:149-335)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.218: Nucleotidyltransferase [81302] (1 superfamily)
   core: alpha-beta-turn-beta-X-beta-(alpha); mixed beta-sheet, order of core strands: 123

4. Superfamily d.218.1: Nucleotidyltransferase [81301] (16 families)

5. Family d.218.1.2: DNA polymerase beta-like [81300] (5 proteins)
   insert X in the core is an alpha-beta(2) unit; mixed 5-stranded sheet, order: 12543; contains extra C-terminal alpha+beta subdomain

6. Protein automated matches [254484] (3 species)
   not a true protein

7. Species Norway rat (Rattus norvegicus) [TaxId:10116] [255608] (2 PDB entries)

8. Domain d2vana2: 2van A:149-335 [152827]
   Other proteins in same PDB: d2vana1
   automated match to d1zqwa2

Details for d2vana2

PDB Entry: 2van, 2.1 Å

PDB Description: nucleotidyl transfer mechanism of mismatched dntp incorporation by dna polymerase b by structural and kinetic analyses

PDB Compounds: (A:) DNA polymerse beta

SCOPe Domain Sequences for d2vana2:

Sequence, based on SEQRES records:

>d2vana2 d.218.1.2 (A:149-335) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}
ripreemlqmqdivlnevkkldpeyiatvcgsfrrgaessgdmdvllthpnftsesskqp
kllhrvveqlqkvrfitdtlskgetkfmgvcqlpsendeneyphrridirlqpkdqyycg
vlyftgsdifnknmrahalekgftineytirplgvtgvageplpvdseqdifdyiqwryr
epkdrse

Sequence, based on observed residues (ATOM records):

>d2vana2 d.218.1.2 (A:149-335) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}
ripreemlqmqdivlnevkkldpeyiatvcgsfrrgaessgdmdvllthpnftsesskqp
kllhrvveqlqkvrfitdtlskgetkfmgvcqlpseyphrridirlqpkdqyycgvlyft
gsdifnknmrahalekgftineytirplgvtgvageplpvdseqdifdyiqwryrepkdr
se

Timeline for d2vana2:

• d2vana2 first appeared in SCOP 1.75
  
• d2vana2 appears in SCOPe 2.07