SCOPe 2.05: Domain d2v3va2: 2v3v A:3-600

Lineage for d2v3va2 (2v3v A:3-600)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.81: Formate dehydrogenase/DMSO reductase, domains 1-3 [53705] (1 superfamily)
   contains of two similar intertwined domains related by pseudo dyad; duplication
   core: 3 layers: a/b/a; parallel beta-sheet of 5 strands, order 32451

4. Superfamily c.81.1: Formate dehydrogenase/DMSO reductase, domains 1-3 [53706] (1 family)
   molybdopterine enzyme

5. Family c.81.1.1: Formate dehydrogenase/DMSO reductase, domains 1-3 [53707] (11 proteins)
   domain 1 (residues 1-55) binds Fe4S4 cluster in FDH but not DMSO reductase

6. Protein automated matches [227025] (4 species)
   not a true protein

7. Species Desulfovibrio desulfuricans [TaxId:876] [255265] (3 PDB entries)

8. Domain d2v3va2: 2v3v A:3-600 [152464]
   Other proteins in same PDB: d2v3va1
   automated match to d2napa2
   complexed with lcp, mgd, mo, sf4, unx

Details for d2v3va2

PDB Entry: 2v3v, 1.99 Å

PDB Description: a new catalytic mechanism of periplasmic nitrate reductase from desulfovibrio desulfuricans atcc 27774 from crystallographic and epr data and based on detailed analysis of the sixth ligand

PDB Compounds: (A:) periplasmic nitrate reductase

SCOPe Domain Sequences for d2v3va2:

Sequence; same for both SEQRES and ATOM records:

>d2v3va2 c.81.1.1 (A:3-600) automated matches {Desulfovibrio desulfuricans [TaxId: 876]}
nrpekwvkgvcrycgtgcgvlvgvkdgkavaiqgdpnnhnagllclkgsllipvlnsker
vtqplvrrhkggklepvswdealdlmasrfrssidmygpnsvawygsgqclteesyvank
ifkggfgtnnvdgnprlcmasavggyvtsfgkdepmgtyadidqatcffiigsntseahp
vlfrriarrkqvepgvkiivadprrtntsriadmhvafrpgtdlafmhsmawviineeld
nprfwqryvnfmdaegkpsdfegykaflenyrpekvaeicrvpveqiygaarafaesaat
mslwcmginqrvqgvfannlihnlhlitgqicrpgatsfsltgqpnacggvrdggalshl
lpagraipnakhraemeklwglpegriapepgyhtvalfealgrgdvkcmiicetnpaht
lpnlnkvhkamshpesfivcieafpdavtleyadlvlppafwcerdgvygcgerryslte
kavdppgqcrptvntlvefarragvdpqlvnfrnaedvwnewrmvskgttydfwgmtrer
lrkesgliwpcpsedhpgtslryvrgqdpcvpadhpdrfffygkpdgraviwmrpakg

Timeline for d2v3va2:

• d2v3va2 first appeared in SCOP 1.75
  
• d2v3va2 appears in SCOPe 2.04
  
• d2v3va2 appears in SCOPe 2.06
  
• d2v3va2 appears in the current release, SCOPe 2.08