SCOP 1.75: Domain d2rdom1: 2rdo M:1-136

Lineage for d2rdom1 (2rdo M:1-136)

1. Root: SCOP 1.75

2. Class d: Alpha and beta proteins (a+b) [53931] (376 folds)

3. Fold d.41: alpha/beta-Hammerhead [54664] (5 superfamilies)
   core: beta-BETA-alpha-beta-BETA-beta-alpha; contains a beta-hammerhead motif similar to that in barrel-sandwich hybrids

4. Superfamily d.41.4: Ribosomal protein L16p/L10e [54686] (2 families)

5. Family d.41.4.2: Ribosomal protein L16p [117888] (1 protein)
   Pfam PF00252

6. Protein Ribosomal protein L16p [117889] (4 species)

7. Species Escherichia coli [TaxId:562] [143200] (29 PDB entries)
   Uniprot P0ADY7 1-136

8. Domain d2rdom1: 2rdo M:1-136 [151953]
   Other proteins in same PDB: d2rdo01, d2rdo11, d2rdo31, d2rdo41, d2rdo81, d2rdoc1, d2rdoc2, d2rdod1, d2rdoe1, d2rdof1, d2rdog1, d2rdog2, d2rdoh1, d2rdoh2, d2rdoi1, d2rdoi2, d2rdoj1, d2rdok1, d2rdol1, d2rdon1, d2rdoo1, d2rdop1, d2rdoq1, d2rdor1, d2rdos1, d2rdot1, d2rdou1, d2rdov1, d2rdow1, d2rdox1, d2rdoy1, d2rdoz1
   automatically matched to d1vs6m1

Details for d2rdom1

PDB Entry: 2rdo, 9.1 Å

PDB Description: 50s subunit with ef-g(gdpnp) and rrf bound

PDB Compounds: (M:) 50S ribosomal protein L16

SCOP Domain Sequences for d2rdom1:

Sequence; same for both SEQRES and ATOM records:

>d2rdom1 d.41.4.2 (M:1-136) Ribosomal protein L16p {Escherichia coli [TaxId: 562]}
mlqpkrtkfrkmhkgrnrglaqgtdvsfgsfglkavgrgrltarqieaarramtravkrq
gkiwirvfpdkpitekplavrmgkgkgnveywvaliqpgkvlyemdgvpeelareafkla
aaklpikttfvtktvm

Timeline for d2rdom1:

• d2rdom1 is new in SCOP 1.75
  
• d2rdom1 appears in SCOPe 2.01
  
• d2rdom1 appears in the current release, SCOPe 2.08