Lineage for d2qscl1 (2qsc L:3-107)

  1. Root: SCOP 1.75
  2. 781541Class b: All beta proteins [48724] (174 folds)
  3. 781542Fold b.1: Immunoglobulin-like beta-sandwich [48725] (28 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 781543Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 781544Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (32 proteins)
  6. 782637Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 782793Species Human (Homo sapiens), cluster 3.2 [TaxId:9606] [88523] (35 PDB entries)
  8. 782845Domain d2qscl1: 2qsc L:3-107 [151316]
    Other proteins in same PDB: d2qscl2
    automatically matched to d1rhha1
    complexed with bma, cl, nag, zn

Details for d2qscl1

PDB Entry: 2qsc (more details), 2.8 Å

PDB Description: Crystal structure analysis of anti-HIV-1 V3-Fab F425-B4e8 in complex with a V3-peptide
PDB Compounds: (L:) Fab F425-B4e8, Light chain

SCOP Domain Sequences for d2qscl1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2qscl1 b.1.1.1 (L:3-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}
vltqspsslsasvgdrvtitcqasqdisnylnwyqhkpgkapklliytasnletgvpsrf
sgggsgthfsftitslqpedaatyfcqqydnlgdlsfgggtkveik

SCOP Domain Coordinates for d2qscl1:

Click to download the PDB-style file with coordinates for d2qscl1.
(The format of our PDB-style files is described here.)

Timeline for d2qscl1: