SCOPe 2.05: Domain d2qpuc2: 2qpu C:1-347

Lineage for d2qpuc2 (2qpu C:1-347)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

5. Family c.1.8.1: Amylase, catalytic domain [51446] (26 proteins)
   members of the family may contain various insert subdomains
   in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain

6. Protein Plant alpha-amylase [51474] (2 species)

7. Species Barley (Hordeum vulgare), AMY1 isozyme [TaxId:4513] [89465] (7 PDB entries)

8. Domain d2qpuc2: 2qpu C:1-347 [151214]
   Other proteins in same PDB: d2qpua1, d2qpub1, d2qpuc1
   automatically matched to d1ht6a2
   complexed with bgc, ca, edo, qps, qpu; mutant

Details for d2qpuc2

PDB Entry: 2qpu, 1.7 Å

PDB Description: sugar tongs mutant s378p in complex with acarbose

PDB Compounds: (C:) Alpha-amylase type A isozyme

SCOPe Domain Sequences for d2qpuc2:

Sequence; same for both SEQRES and ATOM records:

>d2qpuc2 c.1.8.1 (C:1-347) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]}
hqvlfqgfnweswkqsggwynmmmgkvddiaaagvthvwlpppshsvsnegympgrlydi
daskygnaaelksligalhgkgvqaiadivinhrcadykdsrgiycifeggtsdgrldwg
phmicrddtkysdgtanldtgadfaaapdidhlndrvqrelkewllwlksdlgfdawrld
fargyspemakvyidgtspslavaevwdnmatggdgkpnydqdahrqnlvnwvdkvggaa
sagmvfdfttkgilnaavegelwrlidpqgkapgvmgwwpakavtfvdnhdtgstqamwp
fpsdkvmqgyayilthpgipcifydhffnwgfkdqiaalvairkrng

Timeline for d2qpuc2:

• d2qpuc2 first appeared in SCOP 1.75
  
• d2qpuc2 appears in SCOPe 2.04
  
• d2qpuc2 appears in SCOPe 2.06
  
• d2qpuc2 appears in the current release, SCOPe 2.08