SCOP 1.75: Domain d2qbid1: 2qbi D:1-209

Lineage for d2qbid1 (2qbi D:1-209)

1. Root: SCOP 1.75

2. Class b: All beta proteins [48724] (174 folds)

3. Fold b.43: Reductase/isomerase/elongation factor common domain [50412] (4 superfamilies)
   barrel, closed; n=6, S=10; greek-key

4. Superfamily b.43.3: Translation proteins [50447] (6 families)

5. Family b.43.3.2: Ribosomal protein L3 [50461] (1 protein)

6. Protein Ribosomal protein L3 [50462] (4 species)
   superfamily fold is elaborated with additional structures

7. Species Escherichia coli [TaxId:562] [159159] (29 PDB entries)
   Uniprot P60438 1-209

8. Domain d2qbid1: 2qbi D:1-209 [150569]
   Other proteins in same PDB: d2qbi01, d2qbi11, d2qbi31, d2qbi41, d2qbi61, d2qbic1, d2qbic2, d2qbie1, d2qbif1, d2qbig1, d2qbig2, d2qbih1, d2qbih2, d2qbii1, d2qbii2, d2qbij1, d2qbik1, d2qbil1, d2qbim1, d2qbin1, d2qbio1, d2qbip1, d2qbiq1, d2qbir1, d2qbis1, d2qbit1, d2qbiu1, d2qbiv1, d2qbiw1, d2qbix1, d2qbiy1, d2qbiz1
   automatically matched to 2AW4 D:1-209
   complexed with lll, mg, zn

Details for d2qbid1

PDB Entry: 2qbi, 4 Å

PDB Description: Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF). This file contains the 50S subunit of the first 70S ribosome, with gentamicin and RRF bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.

PDB Compounds: (D:) 50S ribosomal protein L3

SCOP Domain Sequences for d2qbid1:

Sequence; same for both SEQRES and ATOM records:

>d2qbid1 b.43.3.2 (D:1-209) Ribosomal protein L3 {Escherichia coli [TaxId: 562]}
miglvgkkvgmtriftedgvsipvtvieveanrvtqvkdlandgyraiqvttgakkanrv
tkpeaghfakagveagrglwefrlaegeeftvgqsisvelfadvkkvdvtgtskgkgfag
tvkrwnfrtqdathgnslshrvpgsigqnqtpgkvfkgkkmagqmgnervtvqsldvvrv
daernlllvkgavpgatgsdlivkpavka

Timeline for d2qbid1:

• d2qbid1 is new in SCOP 1.75
  
• d2qbid1 appears in SCOPe 2.01
  
• d2qbid1 appears in the current release, SCOPe 2.08