Lineage for d2qbcm1 (2qbc M:1-136)

  1. Root: SCOPe 2.04
  2. 1631855Class d: Alpha and beta proteins (a+b) [53931] (380 folds)
  3. 1647036Fold d.41: alpha/beta-Hammerhead [54664] (5 superfamilies)
    core: beta-BETA-alpha-beta-BETA-beta-alpha; contains a beta-hammerhead motif similar to that in barrel-sandwich hybrids
  4. 1647277Superfamily d.41.4: Ribosomal protein L16p/L10e [54686] (2 families) (S)
  5. 1647342Family d.41.4.2: Ribosomal protein L16p [117888] (1 protein)
    Pfam PF00252
  6. 1647343Protein Ribosomal protein L16p [117889] (4 species)
  7. 1647351Species Escherichia coli [TaxId:562] [143200] (29 PDB entries)
    Uniprot P0ADY7 1-136
  8. 1647363Domain d2qbcm1: 2qbc M:1-136 [150419]
    Other proteins in same PDB: d2qbc01, d2qbc11, d2qbc31, d2qbc41, d2qbcc1, d2qbcc2, d2qbcd1, d2qbce1, d2qbcf1, d2qbcg1, d2qbcg2, d2qbch1, d2qbch2, d2qbci1, d2qbci2, d2qbcj1, d2qbck1, d2qbcl1, d2qbcn1, d2qbco1, d2qbcp1, d2qbcq1, d2qbcr1, d2qbcs1, d2qbct1, d2qbcu1, d2qbcv1, d2qbcw1, d2qbcx1, d2qbcy1, d2qbcz1
    automatically matched to d1vs6m1
    protein/RNA complex; complexed with lll, mg, zn

Details for d2qbcm1

PDB Entry: 2qbc (more details), 3.54 Å

PDB Description: Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin. This file contains the 50S subunit of the second 70S ribosome, with gentamicin bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.
PDB Compounds: (M:) 50S ribosomal protein L16

SCOPe Domain Sequences for d2qbcm1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2qbcm1 d.41.4.2 (M:1-136) Ribosomal protein L16p {Escherichia coli [TaxId: 562]}
mlqpkrtkfrkmhkgrnrglaqgtdvsfgsfglkavgrgrltarqieaarramtravkrq
gkiwirvfpdkpitekplavrmgkgkgnveywvaliqpgkvlyemdgvpeelareafkla
aaklpikttfvtktvm

SCOPe Domain Coordinates for d2qbcm1:

Click to download the PDB-style file with coordinates for d2qbcm1.
(The format of our PDB-style files is described here.)

Timeline for d2qbcm1: