Lineage for d2qaom1 (2qao M:1-136)

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2944850Fold d.41: alpha/beta-Hammerhead [54664] (5 superfamilies)
    core: beta-BETA-alpha-beta-BETA-beta-alpha; contains a beta-hammerhead motif similar to that in barrel-sandwich hybrids
  4. 2945283Superfamily d.41.4: Ribosomal protein L16p/L10e [54686] (2 families) (S)
  5. 2945348Family d.41.4.2: Ribosomal protein L16p [117888] (1 protein)
    Pfam PF00252
  6. 2945349Protein Ribosomal protein L16p [117889] (4 species)
  7. 2945357Species Escherichia coli [TaxId:562] [143200] (29 PDB entries)
    Uniprot P0ADY7 1-136
  8. 2945358Domain d2qaom1: 2qao M:1-136 [150306]
    Other proteins in same PDB: d2qao01, d2qao11, d2qao31, d2qao41, d2qaoc1, d2qaoc2, d2qaod1, d2qaoe1, d2qaof1, d2qaog1, d2qaog2, d2qaoh1, d2qaoh2, d2qaoi1, d2qaoi2, d2qaoj1, d2qaok1, d2qaol1, d2qaon1, d2qaoo1, d2qaop1, d2qaoq1, d2qaor1, d2qaos1, d2qaot1, d2qaou1, d2qaov1, d2qaow1, d2qaox1, d2qaoy1, d2qaoz1
    protein/RNA complex; complexed with mg, nmy, zn
    protein/RNA complex; complexed with mg, nmy, zn

Details for d2qaom1

PDB Entry: 2qao (more details), 3.21 Å

PDB Description: Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin. This file contains the 50S subunit of the second 70S ribosome, with neomycin bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.
PDB Compounds: (M:) 50S ribosomal protein L16

SCOPe Domain Sequences for d2qaom1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2qaom1 d.41.4.2 (M:1-136) Ribosomal protein L16p {Escherichia coli [TaxId: 562]}
mlqpkrtkfrkmhkgrnrglaqgtdvsfgsfglkavgrgrltarqieaarramtravkrq
gkiwirvfpdkpitekplavrmgkgkgnveywvaliqpgkvlyemdgvpeelareafkla
aaklpikttfvtktvm

SCOPe Domain Coordinates for d2qaom1:

Click to download the PDB-style file with coordinates for d2qaom1.
(The format of our PDB-style files is described here.)

Timeline for d2qaom1: