Lineage for d2qamf1 (2qam F:1-178)

  1. Root: SCOPe 2.04
  2. 1631855Class d: Alpha and beta proteins (a+b) [53931] (380 folds)
  3. 1657314Fold d.77: RL5-like [55281] (1 superfamily)
    beta-alpha-beta(2)-alpha-beta(3)-alpha; 2 layers, alpha/beta; antiparallel beta-sheet: order 231654
  4. 1657315Superfamily d.77.1: RL5-like [55282] (3 families) (S)
  5. 1657316Family d.77.1.1: Ribosomal protein L5 [55283] (1 protein)
  6. 1657317Protein Ribosomal protein L5 [55284] (5 species)
    synonym: 50S ribosomal protein L5p, HMAL5, HL13
  7. 1657328Species Escherichia coli [TaxId:562] [160488] (29 PDB entries)
    Uniprot P62399 1-178
  8. 1657329Domain d2qamf1: 2qam F:1-178 [150243]
    Other proteins in same PDB: d2qam01, d2qam11, d2qam21, d2qam31, d2qam41, d2qamc1, d2qamc2, d2qamd1, d2qame1, d2qamg1, d2qamg2, d2qamh1, d2qamh2, d2qami1, d2qami2, d2qamj1, d2qamk1, d2qaml1, d2qamm1, d2qamn1, d2qamo1, d2qamp1, d2qamq1, d2qamr1, d2qams1, d2qamt1, d2qamu1, d2qamv1, d2qamw1, d2qamx1, d2qamy1, d2qamz1
    automatically matched to 2AW4 F:1-178
    protein/RNA complex; complexed with mg, nmy, zn

Details for d2qamf1

PDB Entry: 2qam (more details), 3.21 Å

PDB Description: Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin. This file contains the 50S subunit of the first 70S ribosome, with neomycin bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.
PDB Compounds: (F:) 50S ribosomal protein L5

SCOPe Domain Sequences for d2qamf1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2qamf1 d.77.1.1 (F:1-178) Ribosomal protein L5 {Escherichia coli [TaxId: 562]}
aklhdyykdevvkklmtefnynsvmqvprvekitlnmgvgeaiadkklldnaaadlaais
gqkplitkarksvagfkirqgypigckvtlrgermwefferlitiavprirdfrglsaks
fdgrgnysmgvreqiifpeidydkvdrvrgldititttaksdeegrallaafdfpfrk

SCOPe Domain Coordinates for d2qamf1:

Click to download the PDB-style file with coordinates for d2qamf1.
(The format of our PDB-style files is described here.)

Timeline for d2qamf1: