SCOP 1.75: Domain d2q80b1: 2q80 B:6-295

Lineage for d2q80b1 (2q80 B:6-295)

1. Root: SCOP 1.75

2. Class a: All alpha proteins [46456] (284 folds)

3. Fold a.128: Terpenoid synthases [48575] (1 superfamily)
   multihelical; core: 8 helices (C-J) are arranged in 2 parallel layers

4. Superfamily a.128.1: Terpenoid synthases [48576] (5 families)
   duplication: two metal-binding sites are related by a pseudo dyad that also relates helices C-F to helices G-J

5. Family a.128.1.1: Isoprenyl diphosphate synthases [48577] (3 proteins)

6. Protein Geranylgeranyl pyrophosphate synthetase [158813] (1 species)

7. Species Human (Homo sapiens) [TaxId:9606] [158814] (1 PDB entry)
   Uniprot O95749 6-296

8. Domain d2q80b1: 2q80 B:6-295 [150113]
   automatically matched to 2Q80 A:6-296
   complexed with grg, mg

Details for d2q80b1

PDB Entry: 2q80, 2.7 Å

PDB Description: Crystal structure of human geranylgeranyl pyrophosphate synthase bound to GGPP

PDB Compounds: (B:) Geranylgeranyl pyrophosphate synthetase

SCOP Domain Sequences for d2q80b1:

Sequence, based on SEQRES records:

>d2q80b1 a.128.1.1 (B:6-295) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
etvqrillepykyllqlpgkqvrtklsqafnhwlkvpedklqiiievtemlhnasllidd
iednsklrrgfpvahsiygipsvinsanyvyflglekvltldhpdavklftrqllelhqg
qgldiywrdnytcpteeeykamvlqktgglfglavglmqlfsdykedlkpllntlglffq
irddyanlhskeysenksfcedltegkfsfptihaiwsrpestqvqnilrqrtenidikk
ycvhyledvgsfeytrntlkeleakaykqidarggnpelvalvkhlskmf

Sequence, based on observed residues (ATOM records):

>d2q80b1 a.128.1.1 (B:6-295) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
etvqrillepykyllqlpgkqvrtklsqafnhwlkvpedklqiiievtemlhnasllidd
iednsklrrgfpvahsiygipsvinsanyvyflglekvltldhpdavklftrqllelhqg
qgldiywrdnytcpteeeykamvlqktgglfglavglmqlfsdykedlkpllntlglffq
irddyanlhsksfcedltegkfsfptihaiwsrpestqvqnilrqrtenidikkycvhyl
edvgsfeytrntlkeleakaykqidarggnpelvalvkhlskmf

Timeline for d2q80b1:

• d2q80b1 is new in SCOP 1.75
  
• d2q80b1 is called d2q80b_ in SCOPe 2.01
  
• d2q80b1 appears in the current release, SCOPe 2.08, called d2q80b_