Lineage for d2pyjb1 (2pyj B:3-187)

  1. Root: SCOPe 2.07
  2. 2434694Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2491249Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 2493668Superfamily c.55.3: Ribonuclease H-like [53098] (16 families) (S)
    consists of one domain of this fold
  5. 2494311Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (17 proteins)
    contains Pfam PF00929
  6. 2494476Protein Exonuclease domain of phi29 DNA polymerase [117650] (1 species)
  7. 2494477Species Bacteriophage phi-29 [TaxId:10756] [117651] (8 PDB entries)
    Uniprot P03680
  8. 2494481Domain d2pyjb1: 2pyj B:3-187 [149945]
    Other proteins in same PDB: d2pyja2, d2pyjb2
    automated match to d1xhxa1
    protein/DNA complex; complexed with dgt, edo, mg, mn

Details for d2pyjb1

PDB Entry: 2pyj (more details), 2.03 Å

PDB Description: phi29 dna polymerase complexed with primer-template dna and incoming nucleotide substrates (ternary complex)
PDB Compounds: (B:) DNA polymerase

SCOPe Domain Sequences for d2pyjb1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2pyjb1 c.55.3.5 (B:3-187) Exonuclease domain of phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: 10756]}

SCOPe Domain Coordinates for d2pyjb1:

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Timeline for d2pyjb1:

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