SCOP 1.75: Domain d2py5b2: 2py5 B:188-575

Lineage for d2py5b2 (2py5 B:188-575)

1. Root: SCOP 1.75

2. Class e: Multi-domain proteins (alpha and beta) [56572] (66 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (6 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.1: DNA polymerase I [56673] (4 proteins)

6. Protein phi29 DNA polymerase [118193] (1 species)

7. Species Bacteriophage phi-29 [TaxId:10756] [118194] (8 PDB entries)
   Uniprot P03680

8. Domain d2py5b2: 2py5 B:188-575 [149931]
   Other proteins in same PDB: d2py5a1, d2py5b1
   automatically matched to d1xhxa2
   complexed with edo; mutant

Details for d2py5b2

PDB Entry: 2py5, 1.6 Å

PDB Description: phi29 dna polymerase complexed with single-stranded dna

PDB Compounds: (B:) DNA polymerase

SCOP Domain Sequences for d2py5b2:

Sequence, based on SEQRES records:

>d2py5b2 e.8.1.1 (B:188-575) phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: 10756]}
mtagsdslkgfkdiittkkfkkvfptlslgldkevryayrggftwlndrfkekeigegmv
fdvnslypaqmysrllpygepivfegkyvwdedyplhiqhircefelkegyiptiqikrs
rfykgneylkssggeiadlwlsnvdlelmkehydlynveyisglkfkattglfkdfidkw
tyikttsegaikqlaklmlnslygkfasnpdvtgkvpylkengalgfrlgeeetkdpvyt
pmgvfitawaryttitaaqacydriiycdtdsihltgteipdvikdivdpkklgywahes
tfkrakylrqktyiqdiymkevdgklvegspddytdikfsvkcagmtdkikkevtfenfk
vgfsrkmkpkpvqvpggvvlvddtftik

Sequence, based on observed residues (ATOM records):

>d2py5b2 e.8.1.1 (B:188-575) phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: 10756]}
mtagsdslkgfkdiittkkfkkvfptlslgldkevryayrggftwlndrfkekeigegmv
fdvnslypaqmysrllpygepivfegkyvwdedyplhiqhircefelkegyiptiqieyl
kssggeiadlwlsnvdlelmkehydlynveyisglkfkattglfkdfidkwtyikttseg
aikqlaklmlnslygkfasnpdvtgkvpylkengalgfrlgeeetkdpvytpmgvfitaw
aryttitaaqacydriiycdtdsihltgteipdvikdivdpkklgywahestfkrakylr
qktyiqdiymkevdgklvegspddytdikfsvkcagmtdkikkevtfenfkvgfsrkmkp
kpvqvpggvvlvddtftik

Timeline for d2py5b2:

• d2py5b2 is new in SCOP 1.75
  
• d2py5b2 appears in SCOPe 2.01
  
• d2py5b2 appears in the current release, SCOPe 2.08