SCOPe 2.04: Domain d2pi6a1: 2pi6 A:1-239,A:308-361

Lineage for d2pi6a1 (2pi6 A:1-239,A:308-361)

1. Root: SCOPe 2.04

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

5. Family c.1.8.5: Type II chitinase [51534] (15 proteins)
   glycosylase family 18

6. Protein Signal processing protein (SPC-40, MGP-40) [89480] (5 species)
   secreted during involution

7. Species Sheep (Ovis aries) [TaxId:9940] [109611] (11 PDB entries)
   Uniprot Q6TMG6

8. Domain d2pi6a1: 2pi6 A:1-239,A:308-361 [149501]
   Other proteins in same PDB: d2pi6a2
   automatically matched to d1ljya1
   complexed with eoh, mpd

Details for d2pi6a1

PDB Entry: 2pi6, 1.65 Å

PDB Description: crystal structure of the sheep signalling glycoprotein (sps-40) complex with 2-methyl-2-4-pentanediol at 1.65a resolution reveals specific binding characteristics of sps-40

PDB Compounds: (A:) Chitinase-3-like protein 1

SCOPe Domain Sequences for d2pi6a1:

Sequence; same for both SEQRES and ATOM records:

>d2pi6a1 c.1.8.5 (A:1-239,A:308-361) Signal processing protein (SPC-40, MGP-40) {Sheep (Ovis aries) [TaxId: 9940]}
yklicyytswsqyregdgscfpdaidpflcthviytfanisnneidtwewndvtlydtln
tlknrnpklktllsvggwnfgperfskiasktqsrrtfiksvppflrthgfdgldlawly
pgrrdkrhlttlvkemkaefireaqagteqlllsaavsagkiaidrgydiaqisrhldfi
slltydfhgawrqtvghhsplfrgnedassrfsnadyavsymlrlgapanklvmgiptXd
dqesvknkarylknrqlagamvwaldlddfrgtfcgqnltfpltsavkdvlae

Timeline for d2pi6a1:

• d2pi6a1 first appeared in SCOP 1.75
  
• d2pi6a1 appears in SCOPe 2.03
  
• d2pi6a1 appears in SCOPe 2.05
  
• d2pi6a1 appears in the current release, SCOPe 2.08