SCOPe 2.08: Domain d2pgga1: 2pgg A:31-804

Lineage for d2pgga1 (2pgg A:31-804)

1. Root: SCOPe 2.08

2. Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (9 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.4: RNA-dependent RNA-polymerase [56694] (3 proteins)

6. Protein Viral RNA polymerase [56695] (17 species)

7. Species Avian infectious bursal disease virus [TaxId:10995] [160955] (1 PDB entry)
   Uniprot Q9Q6Q5 31-804

8. Domain d2pgga1: 2pgg A:31-804 [149462]

Details for d2pgga1

PDB Entry: 2pgg, 2.5 Å

PDB Description: Crystal Structure of a Birnavirus (IBDV) RNA-dependent RNA Polymerase VP1

PDB Compounds: (A:) RNA-directed RNA polymerase

SCOPe Domain Sequences for d2pgga1:

Sequence, based on SEQRES records:

>d2pgga1 e.8.1.4 (A:31-804) Viral RNA polymerase {Avian infectious bursal disease virus [TaxId: 10995]}
llipkvwvppedplaspsrlakflrengykvlqprslpeneeyetdqilpdlawmrqieg
avlkptlslpigdqeyfpkyypthrpskekpnayppdiallkqmiylflqvpeaneglkd
evtlltqnirdkaygsgtymgqatrlvamkevatgrnpnkdplklgytfesiaqllditl
pvgppgeddkpwvpltrvpsrmlvltgdvdgdfevedylpkinlksssglpyvgrtkget
igemiaisnqflrelstllkqgagtkgsnkkkllsmlsdywylscgllfpkaerydkstw
ltktrniwsapspthlmismitwpvmsnspnnvlniegcpslykfnpfrgglnrivewil
apeepkalvyadniyivhsntwysidlekgeanctrqhmqaamyyiltrgwsdngdpmfn
qtwatfamniapalvvdssclimnlqiktygqgsgnaatfinnhllstlvldqwnlmrqp
rpdseefksiedklginfkiersiddirgklrqlvllaqpgylsggvepeqssptveldl
lgwsatyskdlgiyvpvldkerlfcsaaypkgvenkslkskvgieqaykvvryealrlvg
gwnypllnkacknnagaarrhleakgfpldeflaewselsefgeafegfnikltvtsesl
aelnkpvppkppnvnrpvntgglkavsnalktgryrneaglsglvllatarsrlqdavka
kaeaeklhkskpddpdadwfersetlsdllekadiaskvahsalvetsdaleav

Sequence, based on observed residues (ATOM records):

>d2pgga1 e.8.1.4 (A:31-804) Viral RNA polymerase {Avian infectious bursal disease virus [TaxId: 10995]}
llipkvwvppedplaspsrlakflrengykvlqprslpeneeyetdqilpdlawmrqieg
avlkptlslpigdqeyfpkyypthrpskekpnayppdiallkqmiylflqvpeaneglkd
evtlltqnirdkaygsgtymgqatrlvamkevatgrnpnkdplklgytfesiaqllditl
pvgppgeddkpwvpltrvpsrmlvltgdvdgdfevedylpkinlksssglpyvgrtkget
igemiaisnqflrelstllkqgagtkgsnkkkllsmlsdywylscgllfpkaerydkstw
ltktrniwsapspthlmismitwpvmsnspnnvlniegcpslykfnpfrgglnrivewil
apeepkalvyadniyivhsntwysidlekgeanctrqhmqaamyyiltrgwsdngdpmfn
qtwatfamniapalvvdssclimnlqiktygqgsgnaatfinnhllstlvldqwnlmrqp
rpdseefksiedklginfkiersiddirgklrqlvllaqpgylsggvepeqssptveldl
lgwsatyskdlgiyvpvldkerlfcsaaypkgvgieqaykvvryealrlvggwnypllnk
acknnagaarrhleakgfpldeflaewselsefgeafegfnikltvtseslaelnkpvpp
kppnvnrpvntgglkavsnalktgryrneaglsglvllatarsrlqdavkakaeaeklhk
skpddpdadwfersetlsdllekadiaskvahsalvetsdaleav

Timeline for d2pgga1:

• d2pgga1 first appeared in SCOP 1.75
  
• d2pgga1 appears in SCOPe 2.07