SCOPe 2.08: Domain d2pbkb_: 2pbk B:

Lineage for d2pbkb_ (2pbk B:)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.57: Herpes virus serine proteinase, assemblin [50788] (1 superfamily)
   core: barrel, closed; n=7, S=8; complex topology

4. Superfamily b.57.1: Herpes virus serine proteinase, assemblin [50789] (2 families)
   automatically mapped to Pfam PF00716

5. Family b.57.1.1: Herpes virus serine proteinase, assemblin [50790] (5 proteins)

6. Protein KSHV protease [50795] (1 species)

7. Species Kaposi's sarcoma-associated herpesvirus [TaxId:37296] [50796] (2 PDB entries)

8. Domain d2pbkb_: 2pbk B: [149366]
   automated match to d1fl1a_
   complexed with act

Details for d2pbkb_

PDB Entry: 2pbk, 1.73 Å

PDB Description: crystal structure of kshv protease in complex with hexapeptide phosphonate inhibitor

PDB Compounds: (B:) KSHV protease

SCOPe Domain Sequences for d2pbkb_:

Sequence, based on SEQRES records:

>d2pbkb_ b.57.1.1 (B:) KSHV protease {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
qglyvggfvdvvscpkleqelyldpdqvtdylpvteplpitiehlpetevgwtlglfqvs
hgifctgaitspaflelasrladtshvarapvknlpkeplleilhtwlpglslssihpre
lsqtpsgpvfqhvslcalgrrrgtvavyghdaewvvsrfssvskserahilqhvsscrle
dlstpnfvspletlmakaidagfirdrldllktdrgvasilspvylka

Sequence, based on observed residues (ATOM records):

>d2pbkb_ b.57.1.1 (B:) KSHV protease {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
qglyvggfvdvvscpkleqelyldpdqvtdylpvteplpitiehlpetevgwtlglfqvs
hgifctgaitspaflelasrladtshvarapvknlpkeplleilhtwlpglslssihpre
lsqpsgpvfqhvslcalgrrrgtvavyghdaewvvsrfssvskserahilqhvsscrled
lstpnfvspletlmakaidagfirdrldllktdrgvasilspvylka

Timeline for d2pbkb_:

• d2pbkb_ first appeared in SCOP 1.75, called d2pbkb1
  
• d2pbkb_ appears in SCOPe 2.07