SCOPe 2.08: Domain d2p5gd2: 2p5g D:376-899

Lineage for d2p5gd2 (2p5g D:376-899)

1. Root: SCOPe 2.08

2. Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (9 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.1: DNA polymerase I [56673] (5 proteins)
   in the multi-domain class (e), this applies to domains with different numbers of (sub)domains than the most common domain
   

6. Protein Family B DNA polymerase [56680] (7 species)

7. Species Bacteriophage RB69 [TaxId:12353] [56681] (93 PDB entries)

8. Domain d2p5gd2: 2p5g D:376-899 [149247]
   Other proteins in same PDB: d2p5ga1, d2p5gb1, d2p5gc1, d2p5gd1
   automated match to d1ig9a2
   protein/DNA complex

Details for d2p5gd2

PDB Entry: 2p5g, 2.8 Å

PDB Description: crystal structure of rb69 gp43 in complex with dna with damp opposite an abasic site analog in a 21mer template

PDB Compounds: (D:) DNA polymerase

SCOPe Domain Sequences for d2p5gd2:

Sequence, based on SEQRES records:

>d2p5gd2 e.8.1.1 (D:376-899) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]}
qnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslypsiirqvnispetiagtfk
vaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlaaqrn
geiikealhnpnlsvdepldvdyrfdfsdeikekikklsakslnemlfraqrtevagmta
qinrkllinslygalgnvwfryydlrnataittfgqmalqwierkvneylnevcgtegea
fvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarermepaidrgfremceymn
nkqhlmfmdreaiagpplgskgiggfwtgkkryalnvwdmegtryaepklkimgletqks
stpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisiasvssanniakydvgg
fpgpkcpfhirgiltynraikgnidapqvvegekvyvlplregnpfgdkciawpsgteit
dlikddvlhwmdytvllektfikplegftsaakldyekkaslfd

Sequence, based on observed residues (ATOM records):

>d2p5gd2 e.8.1.1 (D:376-899) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]}
qnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslypsiirqvnispetiagtfk
vaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlaaqrn
geiikeapldvdyrfddeikekikklsakslnemlfraqrtevagmtaqinrkllinsly
galgnvwfryydlrnataittfgqmalqwierkvneylnevcgtegeafvlygdtdsiyv
sadkiidkvgeskfrdtnhwvdfldkfarermepaidrgfremceymnnkqhlmfmdrea
iagpplgskgiggfwtgkkryalnvwdmegtryaepklkimgletqksstpkavqkalke
cirrmlqegeeslqeyfkefekefrqlnyisiasvssanniakydvggfpgpkcpfhirg
iltynraipqvvegekvyvlplregnpfgdkciawpsgteitdlikddvlhwmdytvlle
ktfikplegftsaakldyekkaslfd

Timeline for d2p5gd2:

• d2p5gd2 first appeared in SCOP 1.75
  
• d2p5gd2 appears in SCOPe 2.07