Lineage for d2p5ga2 (2p5g A:376-903)

  1. Root: SCOPe 2.07
  2. 2568173Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds)
  3. 2571153Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. 2571154Superfamily e.8.1: DNA/RNA polymerases [56672] (8 families) (S)
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
  5. 2571155Family e.8.1.1: DNA polymerase I [56673] (5 protein domains)
  6. 2571252Protein Family B DNA polymerase [56680] (7 species)
  7. 2571253Species Bacteriophage RB69 [TaxId:12353] [56681] (93 PDB entries)
  8. 2571364Domain d2p5ga2: 2p5g A:376-903 [149241]
    Other proteins in same PDB: d2p5ga1, d2p5gb1, d2p5gc1, d2p5gd1
    automated match to d1q9xa2
    protein/DNA complex

Details for d2p5ga2

PDB Entry: 2p5g (more details), 2.8 Å

PDB Description: crystal structure of rb69 gp43 in complex with dna with damp opposite an abasic site analog in a 21mer template
PDB Compounds: (A:) DNA polymerase

SCOPe Domain Sequences for d2p5ga2:

Sequence, based on SEQRES records: (download)

>d2p5ga2 e.8.1.1 (A:376-903) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]}
qnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslypsiirqvnispetiagtfk
vaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlaaqrn
geiikealhnpnlsvdepldvdyrfdfsdeikekikklsakslnemlfraqrtevagmta
qinrkllinslygalgnvwfryydlrnataittfgqmalqwierkvneylnevcgtegea
fvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarermepaidrgfremceymn
nkqhlmfmdreaiagpplgskgiggfwtgkkryalnvwdmegtryaepklkimgletqks
stpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisiasvssanniakydvgg
fpgpkcpfhirgiltynraikgnidapqvvegekvyvlplregnpfgdkciawpsgteit
dlikddvlhwmdytvllektfikplegftsaakldyekkaslfdmfdf

Sequence, based on observed residues (ATOM records): (download)

>d2p5ga2 e.8.1.1 (A:376-903) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]}
qnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslypsiirqvnispetiagtfk
vaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlaaqrn
geiikealhyrfdfsdeikekikklsakslnemlfraqrtevagmtaqinrkllinslyg
algnvwfryydlrnataittfgqmalqwierkvneylnevcgtegeafvlygdtdsiyvs
adkiidkvgeskfrdtnhwvdfldkfarermepaidrgfremceymnnkqhlmfmdreai
agpplgskgiggfwtgkkryalnvwdmegtryaepklkimgletqksstpkavqkalkec
irrmlqegeeslqeyfkefekefrqlnyisiasvssanniakydvggfpgpkcpfhirgi
ltynraikgnidapqvvegekvyvlplregnpfgdkciawpsgteitdlikddvlhwmdy
tvllektfikplegftsaakldyekkaslfdmfdf

SCOPe Domain Coordinates for d2p5ga2:

Click to download the PDB-style file with coordinates for d2p5ga2.
(The format of our PDB-style files is described here.)

Timeline for d2p5ga2: