Lineage for d2p5ga1 (2p5g A:1-375)

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2460924Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 2462855Superfamily c.55.3: Ribonuclease H-like [53098] (16 families) (S)
    consists of one domain of this fold
  5. 2463460Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (17 proteins)
    contains Pfam PF00929
  6. 2463472Protein Exonuclease domain of family B DNA polymerases [53125] (8 species)
    elaborated with additional structures and the N-terminal subdomain
  7. 2463473Species Bacteriophage RB69 [TaxId:12353] [53127] (93 PDB entries)
    additional N-terminal subdomain contains rudimental OB-fold and rudimental ferredoxin-like fold
  8. 2463584Domain d2p5ga1: 2p5g A:1-375 [149240]
    Other proteins in same PDB: d2p5ga2, d2p5gb2, d2p5gc2, d2p5gd2
    automated match to d1q9xa1
    protein/DNA complex

Details for d2p5ga1

PDB Entry: 2p5g (more details), 2.8 Å

PDB Description: crystal structure of rb69 gp43 in complex with dna with damp opposite an abasic site analog in a 21mer template
PDB Compounds: (A:) DNA polymerase

SCOPe Domain Sequences for d2p5ga1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2p5ga1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]}

SCOPe Domain Coordinates for d2p5ga1:

Click to download the PDB-style file with coordinates for d2p5ga1.
(The format of our PDB-style files is described here.)

Timeline for d2p5ga1: