Lineage for d2ozma1 (2ozm A:1-375)

  1. Root: SCOPe 2.07
  2. 2434694Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2491249Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 2493668Superfamily c.55.3: Ribonuclease H-like [53098] (16 families) (S)
    consists of one domain of this fold
  5. 2494311Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (17 proteins)
    contains Pfam PF00929
  6. 2494323Protein Exonuclease domain of family B DNA polymerases [53125] (8 species)
    elaborated with additional structures and the N-terminal subdomain
  7. 2494324Species Bacteriophage RB69 [TaxId:12353] [53127] (93 PDB entries)
    additional N-terminal subdomain contains rudimental OB-fold and rudimental ferredoxin-like fold
  8. 2494439Domain d2ozma1: 2ozm A:1-375 [149115]
    Other proteins in same PDB: d2ozma2
    automated match to d1q9xa1
    protein/DNA complex; complexed with mg, n5p

Details for d2ozma1

PDB Entry: 2ozm (more details), 2.86 Å

PDB Description: crystal structure of rb69 gp43 in complex with dna with 5-nitp opposite an abasic site analog
PDB Compounds: (A:) DNA polymerase

SCOPe Domain Sequences for d2ozma1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2ozma1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]}

SCOPe Domain Coordinates for d2ozma1:

Click to download the PDB-style file with coordinates for d2ozma1.
(The format of our PDB-style files is described here.)

Timeline for d2ozma1: