Lineage for d2ozkd2 (2ozk D:191-332)

  1. Root: SCOP 1.75
  2. 849709Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 882130Fold d.294: EndoU-like [142876] (1 superfamily)
    comprises several helices and two three-stranded antiparallel beta-sheets; similar architecture to the RNase A-like fold ((54075))
    comprises several helices and two three-stranded antiparallel beta-sheets; similar architecture to the RNase A-like fold ((54075))
  4. 882131Superfamily d.294.1: EndoU-like [142877] (2 families) (S)
    similarity to the RNase A-like superfamily ((54076)) extends to the active site location and architecture; the two structural cores of the RNase A and EndoU superfamilies are interrelated by a topological permutation - transposition of two pereferial beta-strands, suggesting possible distant homology of the two superfamilies (and their unification in a hyperfamily)
  5. 882138Family d.294.1.2: Nsp15 C-terminal domain-like [142881] (1 protein)
    PfamB PB001946
  6. 882139Protein Nsp15, C-terminal domain [142882] (2 species)
  7. 882143Species SARS coronavirus [TaxId:227859] [142883] (3 PDB entries)
    Uniprot Q6VA80 6620-6774
  8. 882154Domain d2ozkd2: 2ozk D:191-332 [149114]
    Other proteins in same PDB: d2ozka1, d2ozkb1, d2ozkc1, d2ozkd1
    automatically matched to 2OZK A:191-332

Details for d2ozkd2

PDB Entry: 2ozk (more details), 2.9 Å

PDB Description: structure of an n-terminal truncated form of nendou (nsp15) from sars-coronavirus
PDB Compounds: (D:) Uridylate-specific endoribonuclease

SCOP Domain Sequences for d2ozkd2:

Sequence, based on SEQRES records: (download)

>d2ozkd2 d.294.1.2 (D:191-332) Nsp15, C-terminal domain {SARS coronavirus [TaxId: 227859]}
etyftqsrdledfkprsqmetdflelamdefiqryklegyafehivygdfshgqlgglhl
miglakrsqdsplkledfipmdstvknyfitdaqtgsskcvcsvidlllddfveiiksqd
lsviskvvkvtidyaeisfmlw

Sequence, based on observed residues (ATOM records): (download)

>d2ozkd2 d.294.1.2 (D:191-332) Nsp15, C-terminal domain {SARS coronavirus [TaxId: 227859]}
etyftqsrdledfkprsqmetdflelamdefiqryklegyafehivygdfsgglhlmigl
akrsqdsplkledfipmdstvknyfitdsskcvcsvidlllddfveiiksqdlsviskvv
kvtidyaeisfmlw

SCOP Domain Coordinates for d2ozkd2:

Click to download the PDB-style file with coordinates for d2ozkd2.
(The format of our PDB-style files is described here.)

Timeline for d2ozkd2: