SCOPe 2.08: Domain d2oyra1: 2oyr A:1-250

Lineage for d2oyra1 (2oyr A:1-250)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.66: S-adenosyl-L-methionine-dependent methyltransferases [53334] (1 superfamily)
   core: 3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest

4. Superfamily c.66.1: S-adenosyl-L-methionine-dependent methyltransferases [53335] (61 families)

5. Family c.66.1.55: YhiQ-like [159686] (1 protein)
   Pfam PF04445; DUF548; contains extra N-terminal alpha+beta subdomain [beta-alpha-beta(4)]

6. Protein Hypothetical protein YhiQ [159687] (3 species)

7. Species Shigella flexneri [TaxId:623] [159690] (1 PDB entry)
   Uniprot Q7UAV7 1-250

8. Domain d2oyra1: 2oyr A:1-250 [149078]
   complexed with sah

Details for d2oyra1

PDB Entry: 2oyr, 2 Å

PDB Description: crystal structure of upf0341 protein (yhiq) from shigella flexneri in complex with s-adenosyl homocysteine, northeast structural genomics target sfr275

PDB Compounds: (A:) UPF0341 protein yhiQ

SCOPe Domain Sequences for d2oyra1:

Sequence, based on SEQRES records:

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}
mkiclidetgagdgalsvlaarwglehdednlmalvltpehlelrkrdepklggifvdfv
ggamahrrkfgggrgeavakavgikgdylpdvvdataglgrdafvlasvgcrvrmlernp
vvaallddglargyadaeiggwlqerlqlihassltaltditprpqvvyldpmfphkqks
alvkkemrvfqslvgpdldadglleparllatkrvvvkrpdyapplanvatpnavvtkgh
rfdiyagtpv

Sequence, based on observed residues (ATOM records):

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}
mkiclidetgagdgalsvlaarwglehdednlmalvltpehlelrkrdepklggifvdfv
ggamahrrkfgggrgeavakavgikgdylpdvvdataglgrdafvlasvgcrvrmlernp
vvaallddglargyadaeiggwlqerlqlihassltaltditprpqvvyldpmfphkqkk
emrvfqslvgpdldadglleparllatkrvvvkrpdyapplanvatpnavvtkghrfdiy
agtpv

Timeline for d2oyra1:

• d2oyra1 first appeared in SCOP 1.75
  
• d2oyra1 appears in SCOPe 2.07