SCOPe 2.07: Domain d2oyqd2: 2oyq D:376-898

Lineage for d2oyqd2 (2oyq D:376-898)

1. Root: SCOPe 2.07

2. Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (8 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.1: DNA polymerase I [56673] (5 proteins)

6. Protein Family B DNA polymerase [56680] (7 species)

7. Species Bacteriophage RB69 [TaxId:12353] [56681] (93 PDB entries)

8. Domain d2oyqd2: 2oyq D:376-898 [149077]
   Other proteins in same PDB: d2oyqa1, d2oyqb1, d2oyqc1, d2oyqd1
   automated match to d1ig9a2
   protein/DNA complex; complexed with mg, n5p

Details for d2oyqd2

PDB Entry: 2oyq, 2.86 Å

PDB Description: crystal structure of rb69 gp43 in complex with dna with 5-nimp opposite an abasic site analog

PDB Compounds: (D:) DNA polymerase

SCOPe Domain Sequences for d2oyqd2:

Sequence, based on SEQRES records:

>d2oyqd2 e.8.1.1 (D:376-898) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]}
qnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslypsiirqvnispetiagtfk
vaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlaaqrn
geiikealhnpnlsvdepldvdyrfdfsdeikekikklsakslnemlfraqrtevagmta
qinrkllinslygalgnvwfryydlrnataittfgqmalqwierkvneylnevcgtegea
fvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarermepaidrgfremceymn
nkqhlmfmdreaiagpplgskgiggfwtgkkryalnvwdmegtryaepklkimgletqks
stpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisiasvssanniakydvgg
fpgpkcpfhirgiltynraikgnidapqvvegekvyvlplregnpfgdkciawpsgteit
dlikddvlhwmdytvllektfikplegftsaakldyekkaslf

Sequence, based on observed residues (ATOM records):

>d2oyqd2 e.8.1.1 (D:376-898) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]}
qnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslypsiirqvnispetiagtfk
vaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlaaqrn
geiikeapldvdyrfddeikekikklsakslnemlfraqrtevagmtaqinrkllinsly
galgnvwfryydlrnataittfgqmalqwierkvneylnevcgtegeafvlygdtdsiyv
sadkiidkvgeskfrdtnhwvdfldkfarermepaidrgfremceymnnkqhlmfmdrea
iagpplgskgiggfwtgkkryalnvwdmegtryaepklkimgletqksstpkavqkalke
cirrmlqegeeslqeyfkefekefrqlnyisiasvdlikddvlhwmdytvllektfikpl
egftsaakldyekkaslf

Timeline for d2oyqd2:

• d2oyqd2 first appeared in SCOP 1.75
  
• d2oyqd2 appears in SCOPe 2.06
  
• d2oyqd2 appears in the current release, SCOPe 2.08