Class c: Alpha and beta proteins (a/b) [51349] (147 folds) |
Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies) 3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest |
Superfamily c.55.3: Ribonuclease H-like [53098] (15 families) consists of one domain of this fold |
Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (16 proteins) contains Pfam PF00929 |
Protein Exonuclease domain of family B DNA polymerases [53125] (8 species) elaborated with additional structures and the N-terminal subdomain |
Species Bacteriophage RB69 [TaxId:12353] [53127] (15 PDB entries) additional N-terminal subdomain contains rudimental OB-fold and rudimental ferredoxin-like fold |
Domain d2oyqd1: 2oyq D:2-375 [149076] Other proteins in same PDB: d2oyqa2, d2oyqb2, d2oyqc2, d2oyqd2 automatically matched to d1clqa1 protein/DNA complex; complexed with mg, n5p |
PDB Entry: 2oyq (more details), 2.86 Å
SCOPe Domain Sequences for d2oyqd1:
Sequence, based on SEQRES records: (download)
>d2oyqd1 c.55.3.5 (D:2-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]} kefyltveqigdsiferyidsngrertreveykpslfahcpesqatkyfdiygkpctrkl fanmrdasqwikrmediglealgmddfklaylsdtynyeikydhtkirvanfdievtspd gfpepsqakhpidaithydsiddrfyvfdllnspygnveewsieiaaklqeqggdevpse iidkiiympfdnekellmeylnfwqqktpviltgwnvesfaipyvynriknifgestakr lsphrktrvkvienmygsreiitlfgisvldyidlykkfsftnqpsysldyisefelnvg klkydgpisklresnhqryisyniiavyrvlqidakrqfinlsldmgyyakiqiqsvfsp iktwdaiifnslke
>d2oyqd1 c.55.3.5 (D:2-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]} kefyltveqigdsiferyidsngrertreveykpslfahcpesqatkyfdiygkpctrkl fanmrdasqwikrmediglealgmddfklaylsdtynyeikydhtkirvanfdievtspd gfpepsqakhpidaithydsiddrfyvfdllnspygnveewsieiaaggdevpseiidki iympfdnekellmeylnfwqqktpviltgwnvesfaipyvynriknifgestakrlsphr ktrvkvienmygsreiitlfgisvldyidlykkfsftnqpsysldyisefelnvgklkyd gpisklresnhqryisyniiavyrvlqidakrqfinlsldmgyyakiqiqsvfspiktwd aiifnslke
Timeline for d2oyqd1: