SCOPe 2.08: Domain d2oyqc2: 2oyq C:376-900

Lineage for d2oyqc2 (2oyq C:376-900)

1. Root: SCOPe 2.08

2. Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (9 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.1: DNA polymerase I [56673] (5 proteins)
   in the multi-domain class (e), this applies to domains with different numbers of (sub)domains than the most common domain
   

6. Protein Family B DNA polymerase [56680] (7 species)

7. Species Bacteriophage RB69 [TaxId:12353] [56681] (93 PDB entries)

8. Domain d2oyqc2: 2oyq C:376-900 [149075]
   Other proteins in same PDB: d2oyqa1, d2oyqb1, d2oyqc1, d2oyqd1
   automated match to d1ig9a2
   protein/DNA complex; complexed with mg, n5p

Details for d2oyqc2

PDB Entry: 2oyq, 2.86 Å

PDB Description: crystal structure of rb69 gp43 in complex with dna with 5-nimp opposite an abasic site analog

PDB Compounds: (C:) DNA polymerase

SCOPe Domain Sequences for d2oyqc2:

Sequence, based on SEQRES records:

>d2oyqc2 e.8.1.1 (C:376-900) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]}
qnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslypsiirqvnispetiagtfk
vaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlaaqrn
geiikealhnpnlsvdepldvdyrfdfsdeikekikklsakslnemlfraqrtevagmta
qinrkllinslygalgnvwfryydlrnataittfgqmalqwierkvneylnevcgtegea
fvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarermepaidrgfremceymn
nkqhlmfmdreaiagpplgskgiggfwtgkkryalnvwdmegtryaepklkimgletqks
stpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisiasvssanniakydvgg
fpgpkcpfhirgiltynraikgnidapqvvegekvyvlplregnpfgdkciawpsgteit
dlikddvlhwmdytvllektfikplegftsaakldyekkaslfdm

Sequence, based on observed residues (ATOM records):

>d2oyqc2 e.8.1.1 (C:376-900) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]}
qnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslypsiirqvnispetiagtfk
vaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlaaqrn
geiikealhepldvdyrfddeikekikklsakslnemlfraqrtevagmtaqinrkllin
slygalgnvwfryydlrnataittfgqmalqwierkvneylnevcgtegeafvlygdtds
iyvsadkiidkvgeskfrdtnhwvdfldkfarermepaidrgfremceymnnkqhlmfmd
reaiagpplgskgiggfwtgkkryalnvwdmegtryaepklkimgletqksstpkavqka
lkecirrmlqegeeslqeyfkefekefrqlnyisiasvssanniakydvggfpgpkcpfh
irgiltynraikgnidapqvvegekvyvlplregnpfgdkciawpsgteitdlikddvlh
wmdytvllektfikplegftsaakldyekkaslfdm

Timeline for d2oyqc2:

• d2oyqc2 first appeared in SCOP 1.75
  
• d2oyqc2 appears in SCOPe 2.07