Lineage for d2oyqa2 (2oyq A:376-903)

  1. Root: SCOPe 2.07
  2. 2568173Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds)
  3. 2571153Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. 2571154Superfamily e.8.1: DNA/RNA polymerases [56672] (8 families) (S)
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
  5. 2571155Family e.8.1.1: DNA polymerase I [56673] (5 protein domains)
  6. 2571252Protein Family B DNA polymerase [56680] (7 species)
  7. 2571253Species Bacteriophage RB69 [TaxId:12353] [56681] (93 PDB entries)
  8. 2571373Domain d2oyqa2: 2oyq A:376-903 [149071]
    Other proteins in same PDB: d2oyqa1, d2oyqb1, d2oyqc1, d2oyqd1
    automated match to d2ozma2
    protein/DNA complex; complexed with mg, n5p

Details for d2oyqa2

PDB Entry: 2oyq (more details), 2.86 Å

PDB Description: crystal structure of rb69 gp43 in complex with dna with 5-nimp opposite an abasic site analog
PDB Compounds: (A:) DNA polymerase

SCOPe Domain Sequences for d2oyqa2:

Sequence, based on SEQRES records: (download)

>d2oyqa2 e.8.1.1 (A:376-903) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]}
qnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslypsiirqvnispetiagtfk
vaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlaaqrn
geiikealhnpnlsvdepldvdyrfdfsdeikekikklsakslnemlfraqrtevagmta
qinrkllinslygalgnvwfryydlrnataittfgqmalqwierkvneylnevcgtegea
fvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarermepaidrgfremceymn
nkqhlmfmdreaiagpplgskgiggfwtgkkryalnvwdmegtryaepklkimgletqks
stpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisiasvssanniakydvgg
fpgpkcpfhirgiltynraikgnidapqvvegekvyvlplregnpfgdkciawpsgteit
dlikddvlhwmdytvllektfikplegftsaakldyekkaslfdmfdf

Sequence, based on observed residues (ATOM records): (download)

>d2oyqa2 e.8.1.1 (A:376-903) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]}
qnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslypsiirqvnispetiagtfk
vaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlartev
agmtaqinrkllinslygalgnvwfryydlrnataittfgqmalqwierkvneylnevcg
tegeafvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarermepaidrgfrem
ceymnnkqhlmfmdreaiagpplgskgiggfwtgkkryalnvwdmegtryaepklkimgl
etqksstpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisiasvssanniak
ydvggfpgpkcpfhirgiltynraikgnidapqvvegekvyvlplregnpfgdkciawps
gteitdlikddvlhwmdytvllektfikplegftsaakldyekkaslfdmfdf

SCOPe Domain Coordinates for d2oyqa2:

Click to download the PDB-style file with coordinates for d2oyqa2.
(The format of our PDB-style files is described here.)

Timeline for d2oyqa2: