SCOPe 2.05: Domain d2olvb1: 2olv B:67-292

Lineage for d2olvb1 (2olv B:67-292)

1. Root: SCOPe 2.05

2. Class d: Alpha and beta proteins (a+b) [53931] (381 folds)

3. Fold d.2: Lysozyme-like [53954] (1 superfamily)
   common alpha+beta motif for the active site region

4. Superfamily d.2.1: Lysozyme-like [53955] (12 families)

5. Family d.2.1.10: PBP transglycosylase domain-like [159832] (3 proteins)
   Pfam PF00912; lacking the characteristic beta-sheet; otherwise has a similar fold to the Family 19 glycosidase

6. Protein Penicillin-binding protein 2, PBP2 [159835] (1 species)

7. Species Staphylococcus aureus [TaxId:1280] [159836] (3 PDB entries)
   Uniprot Q2YY56 67-292

8. Domain d2olvb1: 2olv B:67-292 [148823]
   Other proteins in same PDB: d2olva2, d2olvb2
   automated match to d2olva1
   complexed with m0e

Details for d2olvb1

PDB Entry: 2olv, 2.8 Å

PDB Description: Structural Insight Into the Transglycosylation Step Of Bacterial Cell Wall Biosynthesis : Donor Ligand Complex

PDB Compounds: (B:) Penicillin-binding protein 2

SCOPe Domain Sequences for d2olvb1:

Sequence, based on SEQRES records:

>d2olvb1 d.2.1.10 (B:67-292) Penicillin-binding protein 2, PBP2 {Staphylococcus aureus [TaxId: 1280]}
aklqdpipakiydkngelvktldngqrhehvnlkdvpksmkdavlatednrfyehgaldy
krlfgaigknltggfgsegastltqqvvkdaflsqhksigrkaqeaylsyrleqeyskdd
ifqvylnkiyysdgvtgikaaakyyfnkdlkdlnlaeeaylaglpqvpnnyniydhpkaa
edrkntvlylmhyhkritdkqwedakkidlkanlvnrtpeerqnid

Sequence, based on observed residues (ATOM records):

>d2olvb1 d.2.1.10 (B:67-292) Penicillin-binding protein 2, PBP2 {Staphylococcus aureus [TaxId: 1280]}
aklqdpipakiydkngelvktldngqrhehvnlkdvpksmkdavlatednrfyehgaldy
krlfgaigkngastltqqvvkdaflsqhksigrkaqeaylsyrleqeyskddifqvylnk
iyysdgvtgikaaakyyfnkdlkdlnlaeeaylaglpqvpnnyniydhpkaaedrkntvl
ylmhyhkritdkqwedakkidlkanlvnrtpeerqnid

Timeline for d2olvb1:

• d2olvb1 first appeared in SCOP 1.75
  
• d2olvb1 appears in SCOPe 2.04
  
• d2olvb1 appears in SCOPe 2.06
  
• d2olvb1 appears in the current release, SCOPe 2.08