Lineage for d2olva1 (2olv A:67-292)

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2152584Fold d.2: Lysozyme-like [53954] (1 superfamily)
    common alpha+beta motif for the active site region
  4. 2152585Superfamily d.2.1: Lysozyme-like [53955] (12 families) (S)
  5. 2154491Family d.2.1.10: PBP transglycosylase domain-like [159832] (3 protein domains)
    Pfam PF00912; lacking the characteristic beta-sheet; otherwise has a similar fold to the Family 19 glycosidase
  6. 2154496Protein Penicillin-binding protein 2, PBP2 [159835] (1 species)
  7. 2154497Species Staphylococcus aureus [TaxId:1280] [159836] (3 PDB entries)
    Uniprot Q2YY56 67-292
  8. 2154499Domain d2olva1: 2olv A:67-292 [148821]
    Other proteins in same PDB: d2olva2, d2olvb2
    complexed with m0e

Details for d2olva1

PDB Entry: 2olv (more details), 2.8 Å

PDB Description: Structural Insight Into the Transglycosylation Step Of Bacterial Cell Wall Biosynthesis : Donor Ligand Complex
PDB Compounds: (A:) Penicillin-binding protein 2

SCOPe Domain Sequences for d2olva1:

Sequence, based on SEQRES records: (download)

>d2olva1 d.2.1.10 (A:67-292) Penicillin-binding protein 2, PBP2 {Staphylococcus aureus [TaxId: 1280]}
aklqdpipakiydkngelvktldngqrhehvnlkdvpksmkdavlatednrfyehgaldy
krlfgaigknltggfgsegastltqqvvkdaflsqhksigrkaqeaylsyrleqeyskdd
ifqvylnkiyysdgvtgikaaakyyfnkdlkdlnlaeeaylaglpqvpnnyniydhpkaa
edrkntvlylmhyhkritdkqwedakkidlkanlvnrtpeerqnid

Sequence, based on observed residues (ATOM records): (download)

>d2olva1 d.2.1.10 (A:67-292) Penicillin-binding protein 2, PBP2 {Staphylococcus aureus [TaxId: 1280]}
aklqdpipakiydkngelvktldngqrhehvnlkdvpksmkdavlatednrfyehgaldy
krlfgaigkgastltqqvvkdaflsqhksigrkaqeaylsyrleqeyskddifqvylnki
yysdgvtgikaaakyyfnkdlkdlnlaeeaylaglpqvpnnyniydhpkaaedrkntvly
lmhyhkritdkqwedakkidlkanlvnrtpeerqnid

SCOPe Domain Coordinates for d2olva1:

Click to download the PDB-style file with coordinates for d2olva1.
(The format of our PDB-style files is described here.)

Timeline for d2olva1:

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Domains from same chain:
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d2olva2