SCOP 1.75: Domain d2o9oa1: 2o9o A:1-239,A:308-361

Lineage for d2o9oa1 (2o9o A:1-239,A:308-361)

1. Root: SCOP 1.75

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (14 families)

5. Family c.1.8.5: Type II chitinase [51534] (14 proteins)
   glycosylase family 18

6. Protein Signal processing protein (SPC-40, MGP-40) [89480] (5 species)
   secreted during involution

7. Species Buffalo (Bubalus bubalis) [TaxId:89462] [110353] (3 PDB entries)
   Uniprot Q7YS85

8. Domain d2o9oa1: 2o9o A:1-239,A:308-361 [148686]
   Other proteins in same PDB: d2o9oa2
   automatically matched to d1owqa1
   complexed with man, nag

Details for d2o9oa1

PDB Entry: 2o9o, 2.8 Å

PDB Description: crystal structure of the buffalo secretory signalling glycoprotein at 2.8 a resolution

PDB Compounds: (A:) Chitinase-3-like protein 1

SCOP Domain Sequences for d2o9oa1:

Sequence; same for both SEQRES and ATOM records:

>d2o9oa1 c.1.8.5 (A:1-239,A:308-361) Signal processing protein (SPC-40, MGP-40) {Buffalo (Bubalus bubalis) [TaxId: 89462]}
yklicyytswsqyregdgscfpdaidpflcthviysfanisnneidtwewndvtlydtln
tlknrnpnlktllsvggwnygsqrfskiasktqsrrtfiksvppflrthgfdgldlawlw
pgwrdkrhlttlvkemkaefvreaqagteqlllsaavtagkiaidrgydiaqisrhldfi
slltydfhgawrqtvghhsplfrgnedassrfsnadyavsymlrlgapanklvmgiptXd
dqesvknkarylknrqlagamvwaldlddfrgtfcgqnltfpltsaikdvlar

Timeline for d2o9oa1:

• d2o9oa1 is new in SCOP 1.75
  
• d2o9oa1 appears in SCOPe 2.01
  
• d2o9oa1 appears in the current release, SCOPe 2.08