SCOPe 2.08: Domain d2o8oa_: 2o8o A:

Lineage for d2o8oa_ (2o8o A:)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.18: Galactose-binding domain-like [49784] (1 superfamily)
   sandwich; 9 strands in 2 sheets; jelly-roll

4. Superfamily b.18.1: Galactose-binding domain-like [49785] (35 families)

5. Family b.18.1.36: Collagen-binding domain [267607] (1 protein)
   PubMed 17977833 describes likely homology between (d2quoa_), (d1w99a3), and (d1nqdb_)

6. Protein Class 1 collagenase [267633] (1 species)

7. Species Clostridium histolyticum [TaxId:1498] [267693] (5 PDB entries)

8. Domain d2o8oa_: 2o8o A: [148677]
   Other proteins in same PDB: d2o8ob3
   automated match to d1nqdb_
   complexed with ca, cl

Details for d2o8oa_

PDB Entry: 2o8o, 1.35 Å

PDB Description: crystal structure of clostridium histolyticum colg collagenase collagen-binding domain 3b at 1.35 angstrom resolution in presence of calcium

PDB Compounds: (A:) collagenase

SCOPe Domain Sequences for d2o8oa_:

Sequence, based on SEQRES records:

>d2o8oa_ b.18.1.36 (A:) Class 1 collagenase {Clostridium histolyticum [TaxId: 1498]}
klkekenndssdkatvipnfnttmqgsllgddsrdyysfevkeegevnieldkkdefgvt
wtlhpesnindritygqvdgnkvsnkvklrpgkyyllvykysgsgnyelrvnk

Sequence, based on observed residues (ATOM records):

>d2o8oa_ b.18.1.36 (A:) Class 1 collagenase {Clostridium histolyticum [TaxId: 1498]}
klkekenndssdkatvipnfnttmqgsllgddsrdyysfevkeegevnieldkkdefgvt
wtlhpesdritygqvdgnkvsnkvklrpgkyyllvykysgsgnyelrvnk

Timeline for d2o8oa_:

• d2o8oa_ first appeared in SCOP 1.75, called d2o8oa1
  
• d2o8oa_ appears in SCOPe 2.07