Lineage for d2nn6e1 (2nn6 E:5-191)

  1. Root: SCOPe 2.01
  2. 1013083Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1016991Fold d.14: Ribosomal protein S5 domain 2-like [54210] (1 superfamily)
    core: beta(3)-alpha-beta-alpha; 2 layers: alpha/beta; left-handed crossover
  4. 1016992Superfamily d.14.1: Ribosomal protein S5 domain 2-like [54211] (13 families) (S)
  5. 1017230Family d.14.1.4: Ribonuclease PH domain 1-like [54229] (10 proteins)
  6. 1017356Protein Exosome complex exonuclease RRP42 [159908] (1 species)
  7. 1017357Species Human (Homo sapiens) [TaxId:9606] [159909] (1 PDB entry)
    Uniprot Q15024 5-191
  8. 1017358Domain d2nn6e1: 2nn6 E:5-191 [148303]
    Other proteins in same PDB: d2nn6a1, d2nn6a2, d2nn6b1, d2nn6b2, d2nn6c1, d2nn6c2, d2nn6d1, d2nn6d2, d2nn6e2, d2nn6f1, d2nn6f2, d2nn6g1, d2nn6g2, d2nn6g3, d2nn6h1, d2nn6h2, d2nn6h3, d2nn6i1, d2nn6i2
    protein/RNA complex

Details for d2nn6e1

PDB Entry: 2nn6 (more details), 3.35 Å

PDB Description: Structure of the human RNA exosome composed of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, and Rrp40
PDB Compounds: (E:) Exosome complex exonuclease RRP42

SCOPe Domain Sequences for d2nn6e1:

Sequence, based on SEQRES records: (download)

>d2nn6e1 d.14.1.4 (E:5-191) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]}
tlseaekvyivhgvqedlrvdgrgcedyrcvevetdvvsntsgsarvklghtdilvgvka
emgtpklekpnegyleffvdcsasatpefegrggddlgteiantlyrifnnkssvdlktl
cisprehcwvlyvdvlllecggnlfdaisiavkaalfntriprvrvledeegskdielsd
dpydcir

Sequence, based on observed residues (ATOM records): (download)

>d2nn6e1 d.14.1.4 (E:5-191) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]}
tlseaekvyivhgvqedlrvdgrgcedyrcvevetdvvsntsgsarvklghtdilvgvka
emgtpklekpnegyleffvdcsasatpefegrggddlgteiantlyrifnnkssvdlktl
cisprehcwvlyvdvlllecggnlfdaisiavkaalfntriprvrvledielsddpydci
r

SCOPe Domain Coordinates for d2nn6e1:

Click to download the PDB-style file with coordinates for d2nn6e1.
(The format of our PDB-style files is described here.)

Timeline for d2nn6e1: