SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d2k6db2 (2k6d B:1-75)

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2158219Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 2158220Superfamily d.15.1: Ubiquitin-like [54236] (11 families) (S)
  5. 2158221Family d.15.1.1: Ubiquitin-related [54237] (39 protein domains)
    Pfam PF00240
  6. 2158454Protein Ubiquitin [54238] (7 species)
  7. 2158532Species Human (Homo sapiens) [TaxId:9606] [54239] (170 PDB entries)
    Uniprot P62988
    identical sequence in many other species
  8. 2158822Domain d2k6db2: 2k6d B:1-75 [148276]
    Other proteins in same PDB: d2k6da_, d2k6db3
    automated match to d3rula_

Details for d2k6db2

PDB Entry: 2k6d (more details)

PDB Description: CIN85 Sh3-C domain in complex with ubiquitin
PDB Compounds: (B:) Ubiquitin

SCOPe Domain Sequences for d2k6db2:

Sequence; same for both SEQRES and ATOM records: (download)

>d2k6db2 d.15.1.1 (B:1-75) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrg

SCOPe Domain Coordinates for d2k6db2:

Click to download the PDB-style file with coordinates for d2k6db2.
(The format of our PDB-style files is described here.)

Timeline for d2k6db2:

View in 3D
Domains from same chain:
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d2k6db3
View in 3D
Domains from other chains:
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d2k6da_