SCOPe 2.08: Domain d2jz6a1: 2jz6 A:6-75

Lineage for d2jz6a1 (2jz6 A:6-75)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.325: L28p-like [143799] (1 superfamily)
   unusual fold consisting of three beta-hairpins, that form a paper clip-like structure, and two helices; could have evolved from a glucocorticoid receptor-like zinc finger domain (57715)

4. Superfamily d.325.1: L28p-like [143800] (2 families)
   In early ribosomal structures, L28p has been misinterpreted as L31p. in the Ribosomal protein L28p family, there are sequences containing two CxxC pairs. Threading these sequences into this fold brings the four cysteines in a similar site to the zinc-binding site of glucocorticoid receptor-like zinc fingers. In the Ribosomal protein L31p, there are also members with two CxxC pairs. However, these won't form a putative zinc-binding site in this fold. The L31p family are classified here temporarily, until its true fold is known

5. Family d.325.1.1: Ribosomal protein L28 [143801] (1 protein)

6. Protein Ribosomal protein L28 (L28p) [143802] (4 species)

7. Species Thermotoga maritima [TaxId:2336] [160710] (1 PDB entry)
   Uniprot Q9WY96 1-70

8. Domain d2jz6a1: 2jz6 A:6-75 [148245]
   Other proteins in same PDB: d2jz6a2, d2jz6a3
   solution structure with the ordered "GATA-like zinc finger" core

Details for d2jz6a1

PDB Entry: 2jz6

PDB Description: solution structure of 50s ribosomal protein l28 from thermotoga maritima. northeast structural genomics consortium target vr97

PDB Compounds: (A:) 50S ribosomal protein L28

SCOPe Domain Sequences for d2jz6a1:

Sequence; same for both SEQRES and ATOM records:

>d2jz6a1 d.325.1.1 (A:6-75) Ribosomal protein L28 (L28p) {Thermotoga maritima [TaxId: 2336]}
makrcevcgkaprsgntvshsdkkserwfrpnlqkvrvvlpdgtikrmrvctsclksgkv
kkyvgqvsev

Timeline for d2jz6a1:

• d2jz6a1 first appeared in SCOP 1.75
  
• d2jz6a1 appears in SCOPe 2.07