SCOPe 2.06: Domain d2jipa2: 2jip A:4-600

Lineage for d2jipa2 (2jip A:4-600)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.81: Formate dehydrogenase/DMSO reductase, domains 1-3 [53705] (1 superfamily)
   contains of two similar intertwined domains related by pseudo dyad; duplication
   core: 3 layers: a/b/a; parallel beta-sheet of 5 strands, order 32451

4. Superfamily c.81.1: Formate dehydrogenase/DMSO reductase, domains 1-3 [53706] (1 family)
   molybdopterine enzyme

5. Family c.81.1.1: Formate dehydrogenase/DMSO reductase, domains 1-3 [53707] (11 proteins)
   domain 1 (residues 1-55) binds Fe4S4 cluster in FDH but not DMSO reductase

6. Protein Periplasmic nitrate reductase alpha chain [53717] (2 species)

7. Species Desulfovibrio desulfuricans [TaxId:876] [53718] (5 PDB entries)
   dissimilatory nitrate reductase (NAP)

8. Domain d2jipa2: 2jip A:4-600 [148096]
   Other proteins in same PDB: d2jipa1
   automated match to d2napa2
   complexed with mgd, mo, sf4, unx

Details for d2jipa2

PDB Entry: 2jip, 2.3 Å

PDB Description: a new catalytic mechanism of periplasmic nitrate reductase from desulfovibrio desulfuricans atcc 27774 from crystallographic and epr data and based on detailed analysis of the sixth ligand

PDB Compounds: (A:) periplasmic nitrate reductase

SCOPe Domain Sequences for d2jipa2:

Sequence; same for both SEQRES and ATOM records:

>d2jipa2 c.81.1.1 (A:4-600) Periplasmic nitrate reductase alpha chain {Desulfovibrio desulfuricans [TaxId: 876]}
rpekwvkgvcrycgtgcgvlvgvkdgkavaiqgnpnnhnagllclkgsllipvlnskerv
tqplvrrhkggklepvswdealdlmasrfrssidmygpnsvawygsgqclteesyvanki
fkggfgtnnvdgnprlcmasavggyvtsfgkdepmgtyadidqatcffiigsntseahpv
lfrriarrkqvepgvkiivadprrtntsriadmhvafrpgtdlafmhsmawviineeldn
prfwqryvnfmdaegkpsdfegykaflenyrpekvaeicrvpveqiygaarafaesaatm
slwcmginqrvqgvfannlihnlhlitgqicrpgatsfsltgqpnacggvrdggalshll
pagraipnakhraemeklwglpegriapepgyhtvalfealgrgdvkcmiicetnpahtl
pnlnkvhkamshpesfivcieafpdavtleyadlvlppafwcerdgvygcgerrysltek
avdppgqcrptvntlvefarragvdpqlvnfrnaedvwnewrmvskgttydfwgmtrerl
rkesgliwpcpsedhpgtslryvrgqdpcvpadhpdrfffygkpdgraviwmrpakg

Timeline for d2jipa2:

• d2jipa2 first appeared in SCOP 1.75
  
• d2jipa2 appears in SCOPe 2.05
  
• d2jipa2 appears in SCOPe 2.07
  
• d2jipa2 appears in the current release, SCOPe 2.08