Lineage for d2jibb2 (2jib B:7-194)

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2445862Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
  4. 2445863Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (9 families) (S)
    there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
    two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules
  5. 2445864Family c.36.1.5: Pyruvate oxidase and decarboxylase Pyr module [88724] (8 protein domains)
    the N-terminal, Pyr module is separated from the C-terminal, PP module by an alpha/beta domain of Rossmann-like topology
    automatically mapped to Pfam PF02776
  6. 2445970Protein Oxalyl-CoA decarboxylase [142205] (1 species)
  7. 2445971Species Oxalobacter formigenes [TaxId:847] [142206] (6 PDB entries)
    Uniprot P40149 7-194
  8. 2445983Domain d2jibb2: 2jib B:7-194 [148084]
    Other proteins in same PDB: d2jiba1, d2jiba3, d2jibb1, d2jibb3
    automated match to d2c31a2
    complexed with adp, coa, mg, pge, tpp

Details for d2jibb2

PDB Entry: 2jib (more details), 2.2 Å

PDB Description: x-ray structure of oxalyl-coa decarboxylase in complex with coenzyme-a
PDB Compounds: (B:) oxalyl-coa decarboxylase

SCOPe Domain Sequences for d2jibb2:

Sequence; same for both SEQRES and ATOM records: (download)

>d2jibb2 c.36.1.5 (B:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}

SCOPe Domain Coordinates for d2jibb2:

Click to download the PDB-style file with coordinates for d2jibb2.
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Timeline for d2jibb2: