SCOPe 2.08: Domain d2j9pb1: 2j9p B:5-462

Lineage for d2j9pb1 (2j9p B:5-462)

1. Root: SCOPe 2.08

2. Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)

3. Fold e.3: beta-lactamase/transpeptidase-like [56600] (1 superfamily)
   contains a cluster of helices and an alpha+beta sandwich

4. Superfamily e.3.1: beta-lactamase/transpeptidase-like [56601] (4 families)

5. Family e.3.1.3: Dac-like [144040] (3 proteins)
   Pfam PF02113; D-Ala-D-Ala carboxypeptidase 3 (S13) family; contains a large insertion comprising two subdomains: (d1) aplha+beta with topological similarity to one subunit of the DTD-like family (69501) and (d2) six-stranded beta-sandwich with a crossed-loop topology

6. Protein Penicillin-binding protein DacC [144041] (1 species)

7. Species Bacillus subtilis [TaxId:1423] [144042] (2 PDB entries)
   Uniprot P39844 34-491

8. Domain d2j9pb1: 2j9p B:5-462 [147945]
   automatically matched to d1w5da1
   complexed with dal, rez

Details for d2j9pb1

PDB Entry: 2j9p, 2.8 Å

PDB Description: crystal structure of the bacillus subtilis pbp4a, and its complex with a peptidoglycan mimetic peptide.

PDB Compounds: (B:) D-alanyl-D-alanine carboxypeptidase dacC

SCOPe Domain Sequences for d2j9pb1:

Sequence; same for both SEQRES and ATOM records:

>d2j9pb1 e.3.1.3 (B:5-462) Penicillin-binding protein DacC {Bacillus subtilis [TaxId: 1423]}
dalsgqidkiladhpalegamagitvrsaetgavlyehsgdtrmrpasslklltaaaals
vlgenysfttevrtdgtlkgkklngnlylkgkgdptllpsdfdkmaeilkhsgvkvikgn
ligddtwhddmrlspdmpwsdeytyygapisaltaspnedydagtvivevtpnqkegeep
avsvspktdyitikndakttaagsekdltierehgtntitiegsvpvdanktkewisvwe
pagyaldlfkqslkkqgitvkgdiktgeapsssdvllshrsmplsklfvpfmklsnngha
evlvkemgkvkkgegswekglevlnstlpefgvdskslvlrdgsgishidavssdqlsql
lydiqdqswfsaylnslpvagnpdrmvggtlrnrmkgtpaqgkvraktgslstvsslsgy
aetksgkklvfsillnglideedgkdiedqiavilanq

Timeline for d2j9pb1:

• d2j9pb1 first appeared in SCOP 1.75
  
• d2j9pb1 appears in SCOPe 2.07