Lineage for d2j9pa1 (2j9p A:5-462)

  1. Root: SCOP 1.75
  2. 883176Class e: Multi-domain proteins (alpha and beta) [56572] (66 folds)
  3. 883341Fold e.3: beta-lactamase/transpeptidase-like [56600] (1 superfamily)
    contains a cluster of helices and an alpha+beta sandwich
  4. 883342Superfamily e.3.1: beta-lactamase/transpeptidase-like [56601] (3 families) (S)
  5. 883798Family e.3.1.3: Dac-like [144040] (3 proteins)
    Pfam PF02113; D-Ala-D-Ala carboxypeptidase 3 (S13) family; contains a large insertion comprising two subdomains: (d1) aplha+beta with topological similarity to one subunit of the DTD-like family ((69501)) and (d2) six-stranded beta-sandwich with a crossed-loop topology
  6. 883821Protein Penicillin-binding protein DacC [144041] (1 species)
  7. 883822Species Bacillus subtilis [TaxId:1423] [144042] (2 PDB entries)
    Uniprot P39844 34-491
  8. 883824Domain d2j9pa1: 2j9p A:5-462 [147944]
    automatically matched to d1w5da1
    complexed with rez

Details for d2j9pa1

PDB Entry: 2j9p (more details), 2.8 Å

PDB Description: crystal structure of the bacillus subtilis pbp4a, and its complex with a peptidoglycan mimetic peptide.
PDB Compounds: (A:) penicillin-binding protein

SCOP Domain Sequences for d2j9pa1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2j9pa1 e.3.1.3 (A:5-462) Penicillin-binding protein DacC {Bacillus subtilis [TaxId: 1423]}
dalsgqidkiladhpalegamagitvrsaetgavlyehsgdtrmrpasslklltaaaals
vlgenysfttevrtdgtlkgkklngnlylkgkgdptllpsdfdkmaeilkhsgvkvikgn
ligddtwhddmrlspdmpwsdeytyygapisaltaspnedydagtvivevtpnqkegeep
avsvspktdyitikndakttaagsekdltierehgtntitiegsvpvdanktkewisvwe
pagyaldlfkqslkkqgitvkgdiktgeapsssdvllshrsmplsklfvpfmklsnngha
evlvkemgkvkkgegswekglevlnstlpefgvdskslvlrdgsgishidavssdqlsql
lydiqdqswfsaylnslpvagnpdrmvggtlrnrmkgtpaqgkvraktgslstvsslsgy
aetksgkklvfsillnglideedgkdiedqiavilanq

SCOP Domain Coordinates for d2j9pa1:

Click to download the PDB-style file with coordinates for d2j9pa1.
(The format of our PDB-style files is described here.)

Timeline for d2j9pa1: