SCOPe 2.06: Domain d2ivdb1: 2ivd B:10-306,B:415-466

Lineage for d2ivdb1 (2ivd B:10-306,B:415-466)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.3: FAD/NAD(P)-binding domain [51904] (1 superfamily)
   core: 3 layers, b/b/a; central parallel beta-sheet of 5 strands, order 32145; top antiparallel beta-sheet of 3 strands, meander

4. Superfamily c.3.1: FAD/NAD(P)-binding domain [51905] (9 families)

5. Family c.3.1.2: FAD-linked reductases, N-terminal domain [51913] (18 proteins)
   C-terminal domain is alpha+beta is common for the family

6. Protein Protoporphyrinogen oxidase [102183] (2 species)

7. Species Myxococcus xanthus [TaxId:34] [159429] (2 PDB entries)
   Uniprot P56601 10-306,415-464

8. Domain d2ivdb1: 2ivd B:10-306,B:415-466 [147807]
   Other proteins in same PDB: d2ivda2, d2ivdb2
   automated match to d2ivda1
   complexed with acj, fad, gol, twn

Details for d2ivdb1

PDB Entry: 2ivd, 2.3 Å

PDB Description: structure of protoporphyrinogen oxidase from myxococcus xanthus with acifluorfen

PDB Compounds: (B:) protoporphyrinogen oxidase

SCOPe Domain Sequences for d2ivdb1:

Sequence, based on SEQRES records:

>d2ivdb1 c.3.1.2 (B:10-306,B:415-466) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}
mnvavvgggisglavahhlrsrgtdavllessarlggavgthalagylveqgpnsfldre
patralaaalnlegriraadpaakrryvytrgrlrsvpasppaflasdilplgarlrvag
elfsrrapegvdeslaafgrrhlghratqvlldavqtgiyagdveqlsvaatfpmlvkme
rehrslilgairaqkaqrqaalpagtapklsgalstfdgglqvlidalaaslgdaahvga
rveglaredggwrliieehgrraelsvaqvvlaapahatakllrplddalaalvagiXyn
lghlervaaidaalqrlpglhlignaykgvglndcirnaaqladalvagn

Sequence, based on observed residues (ATOM records):

>d2ivdb1 c.3.1.2 (B:10-306,B:415-466) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}
mnvavvgggisglavahhlrsrgtdavllessarlggavgthalagylveqgpnsfldre
patralaaalnlegriraadpaakrryvytrgrlrsvpasppaflasdilplgarlrvag
elfsrrapegvdeslaafgrrhlghratqvlldavqtgiyagdveqlsvaatfpmlvkme
rehrslilgairaqkaqrqaklsgalstfdgglqvlidalaaslgdaahvgarveglare
dggwrliieehgrraelsvaqvvlaapahatakllrplddalaalvagiXynlghlerva
aidaalqrlpglhlignaykgvglndcirnaaqladalvagn

Timeline for d2ivdb1:

• d2ivdb1 first appeared in SCOP 1.75
  
• d2ivdb1 appears in SCOPe 2.05
  
• d2ivdb1 appears in SCOPe 2.07
  
• d2ivdb1 appears in the current release, SCOPe 2.08